Bug#785210: marked as done (ITP: r-bioc-multtest -- Bioconductor resampling-based multiple hypothesis testing)
Your message dated Thu, 28 May 2015 17:00:17 +0000
with message-id <E1Yy1AH-0006uv-Sd@franck.debian.org>
and subject line Bug#785210: fixed in r-bioc-multtest 2.24.0-1
has caused the Debian Bug report #785210,
regarding ITP: r-bioc-multtest -- Bioconductor resampling-based multiple hypothesis testing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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785210: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=785210
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : r-bioc-multtest
Version : 2.24.0
Upstream Author : Katherine S. Pollard
* URL : http://bioconductor.org/packages/release/bioc/html/multtest.html
* License : LGPL
Programming Lang: R
Description : Bioconductor resampling-based multiple hypothesis testing
Non-parametric bootstrap and permutation resampling-based multiple
testing procedures (including empirical Bayes methods) for controlling
the family-wise error rate (FWER), generalized family-wise error rate
(gFWER), tail probability of the proportion of false positives (TPPFP),
and false discovery rate (FDR). Several choices of bootstrap-based null
distribution are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are available.
Tests based on a variety of t- and F-statistics (including t-statistics
based on regression parameters from linear and survival models as well
as those based on correlation parameters) are included. When probing
hypotheses with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero and
variance covariance matrix derived from the vector influence function.
Results are reported in terms of adjusted p-values, confidence regions
and test statistic cutoffs. The procedures are directly applicable to
identifying differentially expressed genes in DNA microarray
experiments.
Remark: This is another precondition for r-other-apmswapp and will be
maintained by the Debian Med team at
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
--- End Message ---
--- Begin Message ---
Source: r-bioc-multtest
Source-Version: 2.24.0-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-multtest, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 785210@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated r-bioc-multtest package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 13 May 2015 15:20:31 +0200
Source: r-bioc-multtest
Binary: r-bioc-multtest
Architecture: source amd64
Version: 2.24.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-multtest - Bioconductor resampling-based multiple hypothesis testing
Closes: 785210
Changes:
r-bioc-multtest (2.24.0-1) unstable; urgency=medium
.
* Initial release (closes: #785210).
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