Bug#776655: marked as done (ITP: rna-star -- ultrafast universal RNA-seq aligner)
Your message dated Sat, 31 Jan 2015 17:00:08 +0000
with message-id <E1YHbOy-0003sI-CH@franck.debian.org>
and subject line Bug#776655: fixed in rna-star 2.4.0i-1
has caused the Debian Bug report #776655,
regarding ITP: rna-star -- ultrafast universal RNA-seq aligner
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
776655: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=776655
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : rna-star
Version : 2.4.0i
Upstream Author : Alexander Dobin <dobin@cshl.edu>
* URL : https://github.com/alexdobin/STAR
* License : MIT
Programming Lang: C++
Description : ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
This package is maintained by the Debian Med team at
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/rna-star/trunk/
--- End Message ---
--- Begin Message ---
Source: rna-star
Source-Version: 2.4.0i-1
We believe that the bug you reported is fixed in the latest version of
rna-star, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 776655@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated rna-star package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 29 Jan 2015 14:18:44 +0100
Source: rna-star
Binary: rna-star
Architecture: source amd64
Version: 2.4.0i-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
rna-star - ultrafast universal RNA-seq aligner
Closes: 776655
Changes:
rna-star (2.4.0i-1) unstable; urgency=low
.
* Initial release (Closes: #776655)
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Files:
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