Bug#743930: marked as done (ITP: cassiopee -- index and search tool in genomic sequences)
Your message dated Sun, 13 Apr 2014 18:00:07 +0000
with message-id <E1WZOhL-0005Hi-1R@franck.debian.org>
and subject line Bug#743930: fixed in cassiopee 1.0+dfsg-1
has caused the Debian Bug report #743930,
regarding ITP: cassiopee -- index and search tool in genomic sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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743930: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=743930
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Olivier Sallou <olivier.sallou@irisa.fr>
* Package name : cassiopee
Version : 1.0.0
Upstream Author : Olivier Sallou <olivier.sallou@irisa.fr>
* URL : https://github.com/osallou/cassiopee-c
* License : MIT
Programming Lang: C++
Description : index and search tool in genomic sequences
Cassiopee index and search library C implementation.
It is a complete rewrite of the ruby Cassiopee gem.
It scans an input genomic sequence (dna/rna/protein) and search for
a subsequence with exact match or allowing substitutions (Hamming distance)
and/or insertion/deletions.
This program provides both a binary (Cassiopee) and a shared library.
Index is based on a suffix tree with compression.
It is possible to save the indexed sequence for later use without the need
to reindex the whole sequence (for large data sets).
--- End Message ---
--- Begin Message ---
Source: cassiopee
Source-Version: 1.0+dfsg-1
We believe that the bug you reported is fixed in the latest version of
cassiopee, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 743930@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <osallou@debian.org> (supplier of updated cassiopee package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 08 Apr 2014 12:59:31 +0200
Source: cassiopee
Binary: cassiopee libcassie-doc libcassie1 libcassie-dev
Architecture: source amd64 all
Version: 1.0+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description:
cassiopee - index and search tool in genomic sequences
libcassie-dev - library and headers for development
libcassie-doc - documentation for cassiopee library
libcassie1 - library implementating search algorithms
Closes: 743930
Changes:
cassiopee (1.0+dfsg-1) unstable; urgency=low
.
* Initial release (Closes: #743930)
Checksums-Sha1:
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Files:
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--- End Message ---
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