Bug#756291: marked as done (ITP: prodigal -- microbial (bacterial and archaeal) gene finding program)
Your message dated Mon, 15 Sep 2014 12:00:08 +0000
with message-id <E1XTUwy-0004HY-LQ@franck.debian.org>
and subject line Bug#756291: fixed in prodigal 2.60-1
has caused the Debian Bug report #756291,
regarding ITP: prodigal -- microbial (bacterial and archaeal) gene finding program
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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756291: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756291
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--- Begin Message ---
Subject: ITP: prodigal -- microbial (bacterial and archaeal) gene finding program
Package: wnpp
Owner: Olivier Sallou <olivier.sallou@irisa.fr>
Severity: wishlist
* Package name : prodigal
Version : 2.60
Upstream Author : Doug Hyatt
* URL : http://prodigal.ornl.gov/
* License : GPL
Programming Lang: C
Description : microbial (bacterial and archaeal) gene finding program
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include:
.
Speed: Prodigal is an extremely fast gene recognition tool (written in very vanilla C). It can analyze an entire microbial genome in 30 seconds or less.
.
Accuracy: Prodigal is a highly accurate gene finder. It correctly locates the 3' end of every gene in the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enables it to locate the translation initiation site with great accuracy (96% of the 5' ends in the Ecogene data set are located correctly).
.
Specificity: Prodigal's false positive rate compares favorably with other gene identification programs, and usually falls under 5%.
.
GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations.
.
Metagenomic Version: Prodigal can run in metagenomic mode and analyze sequences even when the organism is unknown.
.
Ease of Use: Prodigal can be run in one step on a single genomic sequence or on a draft genome containing many sequences. It does not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own.
--- End Message ---
--- Begin Message ---
Source: prodigal
Source-Version: 2.60-1
We believe that the bug you reported is fixed in the latest version of
prodigal, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 756291@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <osallou@debian.org> (supplier of updated prodigal package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 28 Jul 2014 09:21:35 +0200
Source: prodigal
Binary: prodigal
Architecture: source amd64
Version: 2.60-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osallou@debian.org>
Description:
prodigal - Microbial (bacterial and archaeal) gene finding program
Closes: 756291
Changes:
prodigal (2.60-1) unstable; urgency=low
.
* Initial release (Closes: #756291).
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Files:
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