Bug#738860: marked as done (ITP: idba -- iterative De Bruijn Graph De Novo short read assembler for transcriptome)
Your message dated Wed, 26 Feb 2014 16:00:08 +0000
with message-id <E1WIgu0-0005HS-0n@franck.debian.org>
and subject line Bug#738860: fixed in idba 1.1.1-1
has caused the Debian Bug report #738860,
regarding ITP: idba -- iterative De Bruijn Graph De Novo short read assembler for transcriptome
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
738860: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=738860
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : idba
Version : 1.1.1
Upstream Author : Yu Peng <ypeng@cs.hku.hk>
* URL : http://i.cs.hku.hk/~alse/hkubrg/projects/idba_tran/
* License : GPL
Programming Lang: C
Description : iterative De Bruijn Graph De Novo short read assembler for transcriptome
IDBA-Tran is an iterative De Bruijn Graph De Novo short read assembler
for transcriptome. It is purely de novo assembler based on only RNA
sequencing reads. IDBA-Tran uses local assembly to reconstructing
missing k-mers in low-expressed transcripts and then employs progressive
cutoff on contigs to separate the graph into components. Each component
corresponds to one gene in most cases and contains not many transcripts.
A heuristic algorithm based on pair-end reads is then used to find the
isoforms.
Remark: This package is maintained by the Debian Med team and the packaging
is available at
svn://anonscm.debian.org/debian-med/trunk/packages/idba/trunk/
--- End Message ---
--- Begin Message ---
Source: idba
Source-Version: 1.1.1-1
We believe that the bug you reported is fixed in the latest version of
idba, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 738860@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated idba package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 13 Feb 2014 13:57:55 +0100
Source: idba
Binary: idba
Architecture: source amd64
Version: 1.1.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
idba - iterative De Bruijn Graph De Novo short read assembler for transc
Closes: 738860
Changes:
idba (1.1.1-1) unstable; urgency=low
.
* Initial release (Closes: #738860)
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