Bug#739508: marked as done (ITP: fitgpc -- fitting genome coverage distributions with mixture models)
Your message dated Fri, 21 Feb 2014 12:00:06 +0000
with message-id <E1WGoly-00037I-5k@franck.debian.org>
and subject line Bug#739508: fixed in fitgcp 0.0.20130418-1
has caused the Debian Bug report #739508,
regarding ITP: fitgpc -- fitting genome coverage distributions with mixture models
to be marked as done.
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If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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739508: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739508
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : fitgpc
Version : 0.0.20130418
Upstream Author : Martin S. Lindner <LindnerM@rki.de>
* URL : http://sourceforge.net/projects/fitgcp/files/
* License : BSD
Programming Lang: Python
Description : fitting genome coverage distributions with mixture models
Genome coverage, the number of sequencing reads mapped to a position in
a genome, is an insightful indicator of irregularities within sequencing
experiments. While the average genome coverage is frequently used within
algorithms in computational genomics, the complete information available
in coverage profiles (i.e. histograms over all coverages) is currently
not exploited to its full extent. Thus, biases such as fragmented or
erroneous reference genomes often remain unaccounted for. Making this
information accessible can improve the quality of sequencing experiments
and quantitative analyses.
.
fitGCP is a framework for fitting mixtures of probability distributions
to genome coverage profiles. Besides commonly used distributions, fitGCP
uses distributions tailored to account for common artifacts. The mixture
models are iteratively fitted based on the Expectation-Maximization
algorithm.
This package is maintained by the Debian Med team and the packaging
is available at
git://anonscm.debian.org/debian-med/fitgpc.git
--- End Message ---
--- Begin Message ---
Source: fitgcp
Source-Version: 0.0.20130418-1
We believe that the bug you reported is fixed in the latest version of
fitgcp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 739508@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated fitgcp package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 07 Feb 2014 11:38:38 +0100
Source: fitgcp
Binary: fitgcp
Architecture: source amd64
Version: 0.0.20130418-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
fitgcp - fitting genome coverage distributions with mixture models
Closes: 739508
Changes:
fitgcp (0.0.20130418-1) unstable; urgency=low
.
* Initial release (Closes: #739508)
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