--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: htslib -- C library for high-throughput sequencing data formats
- From: Charles Plessy <plessy@debian.org>
- Date: Mon, 11 Nov 2013 17:13:32 +0900
- Message-id: <20131111081332.32731.99702.reportbug@localhost.localdomain>
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>
Hello everybody,
I intend to package the HTSlib, that some existing packages (samtools,
tabix) will need later.
Cheers,
-- Charles Plessy, Tsurumi, Kanagawa, Japan
Package name : htslib
Version : 0.2
Upstream Author : See below
URL : https://github.com/samtools/htslib/tree/develop
License : Mostly MIT, see below
Programming Lang: C
Description : C library for high-throughput sequencing data formats
Package: libhts0
Architecture: any
Multi-Arch: same
Depends: ${shlibs:Depends},
${misc:Depends}
Description: C library for high-throughput sequencing data formats
HTSlib is a unified C library for accessing common file formats, such as SAM
(Sequence Alignment/Map) and VCF (Variant Call Format), used for nucleic acid
sequence data obtained by high-throughput sequencing.
.
HTSlib implements a generalized BAM (binary SAM) index. The HTSlib file
reader first looks for the new index and then for the old if the new index is
absent.
.
HTSlib is still experimental. It has not been tested on large-scale real data. Some
useful APIs are missing.
Package: libhts-dev
Architecture: any
Multi-Arch: same
Section: libdevel
Depends: ${shlibs:Depends},
${misc:Depends}
Description: Development files for the HTSlib
HTSlib is a unified C library for accessing common file formats, such as SAM
(Sequence Alignment/Map) and VCF (Variant Call Format), used for nucleic acid
sequence data obtained by high-throughput sequencing.
.
This package contains development files: headers, static library, manual pages,
etc.
Package: htslib-test
Architecture: all
Depends: ${misc:Depends}
Description: Test data for HTSlib
HTSlib is a unified C library for accessing common file formats, such as SAM
(Sequence Alignment/Map) and VCF (Variant Call Format), used for nucleic acid
sequence data obtained by high-throughput sequencing.
.
This package contains test files and scripts for the HTSlib.
Files: *
Copyright: (C) 2012-2013 Genome Research Ltd.
(c) 2008 Broad Institute / Massachusetts Institute of Technology
The Wellcome Trust Sanger Institute
(c) 2008, 2009, 2011 by Attractive Chaos <attractor@live.co.uk>
License: MIT
Files: cram/*
Copyright: (c) 2012-2013 Genome Research Ltd.
(c) 1995-1996 MEDICAL RESEARCH COUNCIL
License: Various_BSD-3-Clause
Files: cram/md5.?
Copyright: No copyright is claimed
License: solar-MD5
This is an OpenSSL-compatible implementation of the RSA Data Security, Inc.
MD5 Message-Digest Algorithm (RFC 1321).
.
Homepage:
http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5
.
Author:
Alexander Peslyak, better known as Solar Designer <solar at openwall.com>
.
This software was written by Alexander Peslyak in 2001. No copyright is
claimed, and the software is hereby placed in the public domain.
In case this attempt to disclaim copyright and place the software in the
public domain is deemed null and void, then the software is
Copyright (c) 2001 Alexander Peslyak and it is hereby released to the
general public under the following terms:
.
Redistribution and use in source and binary forms, with or without
modification, are permitted.
.
There's ABSOLUTELY NO WARRANTY, express or implied.
Files: htslib/razf.?
Copyright: 2008, Jue Ruan <ruanjue@gmail.com>, Heng Li <lh3@sanger.ac.uk>
License: BSD-2-clause~with-minor-differences-in-the-disclaimer
--- End Message ---
--- Begin Message ---
Source: htslib
Source-Version: 0.2.0~rc3-1
We believe that the bug you reported is fixed in the latest version of
htslib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 729282@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated htslib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 16 Nov 2013 15:35:03 +0900
Source: htslib
Binary: libhts0 libhts-dev htslib-test
Architecture: source amd64 all
Version: 0.2.0~rc3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description:
htslib-test - Test data for HTSlib
libhts-dev - Development files for the HTSlib
libhts0 - C library for high-throughput sequencing data formats
Closes: 729282
Changes:
htslib (0.2.0~rc3-1) unstable; urgency=low
.
* Initial release. (Closes: #729282)
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68883a6fb26a0c9fc5d057d370eff2c5d795af5d 183826 libhts0_0.2.0~rc3-1_amd64.deb
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bb6e3c45eb785b132025527bd2bdc884 221284 libdevel optional libhts-dev_0.2.0~rc3-1_amd64.deb
40e1ca3c045337aad2355198183ead36 514106 libs optional htslib-test_0.2.0~rc3-1_all.deb
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