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Bug#717797: marked as done (ITP: freecontact -- fast protein contact predictor)

Your message dated Fri, 30 Aug 2013 01:00:06 +0000
with message-id <E1VFD4I-0003dS-I8@franck.debian.org>
and subject line Bug#717797: fixed in freecontact 1.0.17-1
has caused the Debian Bug report #717797,
regarding ITP: freecontact -- fast protein contact predictor
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
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immediately.)


-- 
717797: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=717797
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@debian.org>

* Package name    : freecontact
  Version         : 1.0.17
  Upstream Author : Laszlo Kajan <lkajan@rostlab.org>
* URL             : http://rostlab.org/
* License         : GPL-3+
  Programming Lang: C++, Fortran
  Description     : fast protein contact predictor

FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.

--- End Message ---
--- Begin Message --- 
Source: freecontact
Source-Version: 1.0.17-1

We believe that the bug you reported is fixed in the latest version of
freecontact, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 717797@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@rostlab.org> (supplier of updated freecontact package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Wed, 13 Mar 2013 16:59:37 +0100
Source: freecontact
Binary: freecontact libfreecontact0 libfreecontact0-dev libfreecontact0-dbg libfreecontact-doc
Architecture: source amd64 all
Version: 1.0.17-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@rostlab.org>
Description: 
 freecontact - fast protein contact predictor
 libfreecontact-doc - documentation for libfreecontact
 libfreecontact0 - fast protein contact predictor library
 libfreecontact0-dbg - debugging symbols for libfreecontact
 libfreecontact0-dev - fast protein contact predictor library - development files
Closes: 717797
Changes: 
 freecontact (1.0.17-1) unstable; urgency=low
 .
   * Fixed shared (as much as could) lib deps (atlas) in d/control.
   * Started initial packaging work.
   * Initial release (Closes: #717797).
   * Added bash completion.
   * Added multiarch support.
   * Imported latest upstream.
Checksums-Sha1: 
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 f884fdf81db0f04a607923f386b074b3021d0bb7 407508 freecontact_1.0.17.orig.tar.xz
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 061da77af830cce76a9270c73c3e6bea4f9c0e3d 102780 libfreecontact0_1.0.17-1_amd64.deb
 d2e475a3231b67c3c99f925b09aafa0159ed6810 117874 libfreecontact0-dev_1.0.17-1_amd64.deb
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 1ca95c1d176528591721cf649221b970deee41eb 181094 libfreecontact-doc_1.0.17-1_all.deb
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 edf7a4588e58f6c9d8dced1b589c5507c0c1de87959c932eb12244b448035314 407508 freecontact_1.0.17.orig.tar.xz
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 db35e0adb2fd3a93f5f5fda7dd0bf5693ea467a35af2f1efce74460795f90f93 181094 libfreecontact-doc_1.0.17-1_all.deb
Files: 
 3f1811de1776e881ce5dc090885a8bbb 2387 science extra freecontact_1.0.17-1.dsc
 90fad4583c229d444a93b5fe0c583787 407508 science extra freecontact_1.0.17.orig.tar.xz
 5bbd6103c55b1b3356826a2267473aee 4805 science extra freecontact_1.0.17-1.debian.tar.gz
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 d6bff42eac25bc53996062785e8a456f 102780 libs extra libfreecontact0_1.0.17-1_amd64.deb
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 a073abf64f981fdc513066c5f291e796 2977530 debug extra libfreecontact0-dbg_1.0.17-1_amd64.deb
 e5c5799c6036e54cd314cf3926b9f669 181094 doc extra libfreecontact-doc_1.0.17-1_all.deb

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