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Bug#378290: marked as done (ITP: proalign -- Probabilistic multiple alignment program)

Your message dated Thu, 16 May 2013 13:00:19 +0000
with message-id <E1Ucxn9-0006Z0-8t@franck.debian.org>
and subject line Bug#378290: fixed in proalign 0.603-1
has caused the Debian Bug report #378290,
regarding ITP: proalign -- Probabilistic multiple alignment program
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
378290: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=378290
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : proalign
  Version         : 0.5alpha1
  Upstream Author : Ari Löytynoja & Michel C. Milinkovitch
  URL             : http://evol-linux1.ulb.ac.be/ueg/ProAlign/
  License         : (GPL, LGPL, BSD, MIT/X, etc.)
  Description     : Probabilistic multiple alignment program

 ProAlign performs probabilistic sequence alignments using hidden Markov
 models (HMM). It includes a graphical interface (GUI) allowing to (i)
 perform alignments of nucleotide or amino-acid sequences, (ii) view the
 quality of solutions, (iii) filter the unreliable alignment regions and
 (iv) export alignments to other softwares.
 .
 ProAlign uses a progressive method, such that multiple alignment is
 created stepwise by performing pairwise alignments in the nodes of a
 guide tree. Sequences are described with vectors of character
 probabilities, and each pairwise alignment reconstructs the ancestral
 (parent) sequence by computing the probabilities of different
 characters according to an evolutionary model. It has been published in
 Bioinformatics. 2003 Aug 12;19(12):1505-13.
 .
  Homepage: http://evol-linux1.ulb.ac.be/ueg/ProAlign/


-- System Information:
Debian Release: testing/unstable
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)

--- End Message ---
--- Begin Message --- 
Source: proalign
Source-Version: 0.603-1

We believe that the bug you reported is fixed in the latest version of
proalign, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 378290@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Thorsten Alteholz <debian@alteholz.de> (supplier of updated proalign package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Tue, 01 May 2013 18:00:00 +0200
Source: proalign
Binary: proalign
Architecture: source amd64
Version: 0.603-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Thorsten Alteholz <debian@alteholz.de>
Description: 
 proalign   - Probabilistic multiple alignment program
Closes: 378290
Changes: 
 proalign (0.603-1) unstable; urgency=low
 .
   * Initial release (Closes: #378290)
Checksums-Sha1: 
 23fcc41c44496e441a0426b1650508a9e22bbe15 1373 proalign_0.603-1.dsc
 74987b59ef602c9fbd893685008a4e381221a51e 63297 proalign_0.603.orig.tar.gz
 7434870528caf2f785de86c07350ca323978c2c4 3252 proalign_0.603-1.debian.tar.gz
 4372007d4a14e0de60c4f0a6ba603c56cd82dabe 149504 proalign_0.603-1_amd64.deb
Checksums-Sha256: 
 49fe2268640d18d2df6a4e58577569f81c7f45c584a431f7f179ad1cad8983f9 1373 proalign_0.603-1.dsc
 ae4c42e6e01b5dacb14e425e654e25e80569bf6cdcd3e7ef68ef31bef8d712d2 63297 proalign_0.603.orig.tar.gz
 d8a2dad07745d19f4f7173152f2fad80bf013d59b79b7513f6eaeb8bddcf177b 3252 proalign_0.603-1.debian.tar.gz
 d90621d2eb1ba25cd57d423b2ca6e0d1c7aacdb0886b76f4f511445c4ececdd4 149504 proalign_0.603-1_amd64.deb
Files: 
 44bd0d8ba3a6c23bb3739448ace73ae2 1373 science optional proalign_0.603-1.dsc
 823dbb52bff9a14a1c33f1f28ef0cdde 63297 science optional proalign_0.603.orig.tar.gz
 35f3d91b5006b34bf8fa71e6a7fdfa2a 3252 science optional proalign_0.603-1.debian.tar.gz
 1613a92c0e77a97f7e2b4467db3ab808 149504 science optional proalign_0.603-1_amd64.deb

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