Bug#680140: ITP: profbval -- PROFbval is a method for predicting residue mobility based on amino-acid sequence.
Hi,
this sounds like a pretty interesting target for the Debian Med team.
Would you consider joining the team and get support for sponsering and
technical help if needed?
Having written this text today the second time I suspect some connection
to RostLab students. Is this correct?
Kind regards
Andreas.
On Tue, Jul 03, 2012 at 09:16:49PM +0000, to_anger@freenet.de wrote:
> Package: wnpp
> Severity: wishlist
> Owner: root <to_anger@freenet.de>
>
>
> * Package name : profbval
> Version : 1.0.16
> Upstream Author : Guy Yachdav <gyachdav@rostlab.org>
> * URL : http://www.predictprotein.org/docs.php
> * License : GPL
> Programming Lang: Perl
> Description : predicts flexibile/rigid residues from sequence
>
> PROFbval is a neural-network based trained on backbone B-value data from X-ray structure. PROFbval was trained on a sequence
> unique set of high-resolution protein structures from the PDB.
>
> The mobility of a given residue on the protein surface is related to its functional role. A common measure of atom mobility in
> proteins is B-value data from x-ray crystallography structures. PROFbval is a method predicting backbone B-values from amino-
> acid sequence. PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can
> locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a
> crystallographer can locate residues that potentially have high experimental B-values.
>
>
>
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>
>
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