Bug#656609: marked as done (ITP: libhmsbeagle -- High-performance lib for Bayesian and Maximum Likelihood phylogenetics)
Your message dated Fri, 20 Jan 2012 22:02:30 +0000
with message-id <E1RoMXW-0003yQ-6Y@franck.debian.org>
and subject line Bug#656609: fixed in libhmsbeagle 1.0-1
has caused the Debian Bug report #656609,
regarding ITP: libhmsbeagle -- High-performance lib for Bayesian and Maximum Likelihood phylogenetics
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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656609: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=656609
Debian Bug Tracking System
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : libhmsbeagle
Version : 1.0
Upstream Author : Andrew Rambaut <rambaut@gmail.com>
* URL : http://code.google.com/p/beagle-lib
* License : LGPL-3+
Programming Lang: C, Java
Description : High-performance lib for Bayesian and Maximum Likelihood phylogenetics
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers. This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.
The package was initially prepared by Tim Booth for BioLinux and
submitted to Debian Med repository at
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/libhmsbeagle/trunk
After making some changes in the packaging I would like to upload
it to Debian because some other packages depend from this lib.
--- End Message ---
--- Begin Message ---
Source: libhmsbeagle
Source-Version: 1.0-1
We believe that the bug you reported is fixed in the latest version of
libhmsbeagle, which is due to be installed in the Debian FTP archive:
libhmsbeagle-dev_1.0-1_amd64.deb
to main/libh/libhmsbeagle/libhmsbeagle-dev_1.0-1_amd64.deb
libhmsbeagle-java_1.0-1_all.deb
to main/libh/libhmsbeagle/libhmsbeagle-java_1.0-1_all.deb
libhmsbeagle1_1.0-1_amd64.deb
to main/libh/libhmsbeagle/libhmsbeagle1_1.0-1_amd64.deb
libhmsbeagle_1.0-1.debian.tar.gz
to main/libh/libhmsbeagle/libhmsbeagle_1.0-1.debian.tar.gz
libhmsbeagle_1.0-1.dsc
to main/libh/libhmsbeagle/libhmsbeagle_1.0-1.dsc
libhmsbeagle_1.0.orig.tar.gz
to main/libh/libhmsbeagle/libhmsbeagle_1.0.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 656609@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated libhmsbeagle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 19 Jan 2012 22:43:44 +0100
Source: libhmsbeagle
Binary: libhmsbeagle-dev libhmsbeagle1 libhmsbeagle-java
Architecture: source amd64 all
Version: 1.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood phylogen
libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood phylogen
libhmsbeagle1 - High-performance lib for Bayesian and Maximum Likelihood phylogen
Closes: 656609
Changes:
libhmsbeagle (1.0-1) unstable; urgency=low
.
* Initial upload to Debian (Closes: #656609)
* debian/get-orig-source: Fetch tagged version instead of trunk
* debian/watch: Detect new tags
* debian/control:
- Add Java library package
- Added needed Java (Build-)Depends
- Moved citation information to upstream-metadata.yaml and
README.Debian
* debian/rules: Build Java Library
* debian/copyright: DEP5
* debian/libhmsbeagle-dev.lintian-overrides: Make less noise about
broken doxygen manpages
* debian/upstream-metadata.yaml: Citation information
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Files:
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d2273669e6f1093a03db54e8ea253f04 228409 libs extra libhmsbeagle_1.0.orig.tar.gz
a670b16419bbd406e7f14d7e4d99bff7 4983 libs extra libhmsbeagle_1.0-1.debian.tar.gz
4c6358c23c0390647bc3e8c8a1309f16 378418 libdevel extra libhmsbeagle-dev_1.0-1_amd64.deb
217038838a78eae710c166932d04b615 123214 libs extra libhmsbeagle1_1.0-1_amd64.deb
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--- End Message ---
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