Bug#652074: marked as done (ITP: cd-hit -- suite of programs designed to quickly group sequences)
Your message dated Thu, 22 Dec 2011 21:32:10 +0000
with message-id <E1RdqFG-0006U4-P9@franck.debian.org>
and subject line Bug#652074: fixed in cd-hit 4.5.7-1
has caused the Debian Bug report #652074,
regarding ITP: cd-hit -- suite of programs designed to quickly group sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
652074: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=652074
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : cd-hit
Version : 4.5.6
Upstream Author : Weizhong Li <liwz@sdsc.edu>
* URL : http://weizhong-lab.ucsd.edu/cd-hit/
* License : GPLv2
Programming Lang: C++, Perl
Description : suite of programs designed to quickly group sequences
cd-hit contains a number of programs designed to quickly group
sequences. cd-hit groups proteins into clusters that meet a user-defined
similarity threshold. cd-hit-est is similar to cd-hit, but designed to
group nucleotide sequences (without introns). cd-hit-est-2d is similar
to cd-hit-2d but designed to compare two nucleotide datasets. A number
of other related programs are also in this package. Please see the
cd-hit user manual, also part of this package, for further information.
The packaging is done in the Debian Med team and is available in Debian
Med SVN at
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/cd-hit/trunk/
The only remaining issue is to clarify source + copyright of the included
PDF documentation.
This WNPP bug solves also bug #651983 - qiime: Recommends: not available
'cd-hit' package.
--- End Message ---
--- Begin Message ---
Source: cd-hit
Source-Version: 4.5.7-1
We believe that the bug you reported is fixed in the latest version of
cd-hit, which is due to be installed in the Debian FTP archive:
cd-hit_4.5.7-1.debian.tar.gz
to main/c/cd-hit/cd-hit_4.5.7-1.debian.tar.gz
cd-hit_4.5.7-1.dsc
to main/c/cd-hit/cd-hit_4.5.7-1.dsc
cd-hit_4.5.7-1_amd64.deb
to main/c/cd-hit/cd-hit_4.5.7-1_amd64.deb
cd-hit_4.5.7.orig.tar.gz
to main/c/cd-hit/cd-hit_4.5.7.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 652074@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated cd-hit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 14 Dec 2011 14:39:32 +0100
Source: cd-hit
Binary: cd-hit
Architecture: source amd64
Version: 4.5.7-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
cd-hit - suite of programs designed to quickly group sequences
Closes: 651983 652074
Changes:
cd-hit (4.5.7-1) unstable; urgency=low
.
* Initial release (Closes: #652074)
* This package is recommended by the package qiime and thus it also
Closes: #651983
Checksums-Sha1:
20ea7175e0c86e91dc327bbc6e288a0d774fa874 1343 cd-hit_4.5.7-1.dsc
d5b2e9261e886bda9437b7320a9acc751c33fa54 393944 cd-hit_4.5.7.orig.tar.gz
a11cc94205ce2faee04b1f016e10cf4e444a91e7 258816 cd-hit_4.5.7-1.debian.tar.gz
9552d9b38392f9ab482fbf5c84fd4c4be657239e 684770 cd-hit_4.5.7-1_amd64.deb
Checksums-Sha256:
a3e80394e112d82a41e5c489ed4fbdcdbc49f71ccaf5ee2926148428fa742b1c 1343 cd-hit_4.5.7-1.dsc
8416ddba5c0f39b1c1b8b620113e94d18ef8a681c20c6da767570919a9757659 393944 cd-hit_4.5.7.orig.tar.gz
965067eb0ae7c6071a2b021261f6193080fbccf29256dbda463b840f31976083 258816 cd-hit_4.5.7-1.debian.tar.gz
d46c74de2dd7e215fbbfbbe73de30b1838df3a2c5cc835a8c3b547fdf6e1a3e4 684770 cd-hit_4.5.7-1_amd64.deb
Files:
8b7aebf64cfa16b7a04ddc70090b7011 1343 science optional cd-hit_4.5.7-1.dsc
1e1dec088dfb5b7b624a5f283e1ae208 393944 science optional cd-hit_4.5.7.orig.tar.gz
c6d2416240f6e4edd0d90e2c452f8cda 258816 science optional cd-hit_4.5.7-1.debian.tar.gz
698ee3436c94301462cd56c1a9149abb 684770 science optional cd-hit_4.5.7-1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)
iEYEARECAAYFAk7y5gAACgkQYDBbMcCf01rHswCeKr3f6skscPxM2Ts3Y3uMh18w
qH8Anj5pZ7u+wYvG0U8B0Tsjv8MRwGpP
=A2c7
-----END PGP SIGNATURE-----
--- End Message ---
Reply to: