[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#627799: marked as done (ITP: cufflinks -- Transcript assembly, differential expression and regulation for RNA-Seq)

Your message dated Sun, 11 Dec 2011 13:32:09 +0000
with message-id <E1RZjVh-0003fx-1D@franck.debian.org>
and subject line Bug#627799: fixed in cufflinks 1.2.1-1
has caused the Debian Bug report #627799,
regarding ITP: cufflinks -- Transcript assembly, differential expression and regulation for RNA-Seq
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
627799: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=627799
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Alex Mestiashvili<alex@biotec.tu-dresden.de>

* Package name    : cufflinks
  Version         : 1.0.2
  Upstream Author : Cole Trapnell
* URL             : http://cufflinks.cbcb.umd.edu
* License         : BSL-1
  Programming Lang: C++, Python
Description : Transcript assembly, differential expression and regulation for RNA-Seq 
 Cufflinks assembles transcripts, estimates their abundances, and tests for
differential expression and regulation in RNA-Seq samples. It accepts aligned 
 RNA-Seq reads and assembles the alignments into a parsimonious set of
 transcripts. Cufflinks then estimates the relative abundances of these
 transcripts based on how many reads support each one.

--- End Message ---
--- Begin Message --- 
Source: cufflinks
Source-Version: 1.2.1-1

We believe that the bug you reported is fixed in the latest version of
cufflinks, which is due to be installed in the Debian FTP archive:

cufflinks_1.2.1-1.debian.tar.gz
  to non-free/c/cufflinks/cufflinks_1.2.1-1.debian.tar.gz
cufflinks_1.2.1-1.dsc
  to non-free/c/cufflinks/cufflinks_1.2.1-1.dsc
cufflinks_1.2.1-1_amd64.deb
  to non-free/c/cufflinks/cufflinks_1.2.1-1_amd64.deb
cufflinks_1.2.1.orig.tar.gz
  to non-free/c/cufflinks/cufflinks_1.2.1.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 627799@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated cufflinks package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sun, 11 Dec 2011 12:07:02 +0900
Source: cufflinks
Binary: cufflinks
Architecture: source amd64
Version: 1.2.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 cufflinks  - Transcript assembly, differential expression and regulation for R
Closes: 627799
Changes: 
 cufflinks (1.2.1-1) unstable; urgency=low
 .
   [ Alexandre Mestiashvili ]
   * New upstream release
   * added patch to fix bam.h location .
   * debian/rules invoke autoreconf
   * debian/rules added overrides for dh_auto_clean and dh_clean
   * added missing dependency - quilt .We use dh_quilt_patch,
     dh_quilt_unpatch helpers
   * debian/control added dependency python (>=2.6.6-3~) for source package
   * debian/control added dependency python (>=2.6.6-3~) for binary package
 .
   [ Andreas Tille ]
   * Added myself to uploaders
   * Debhelper 8 (control+compat)
   * debian/watch: removed dh-make template from watch file
   * debian/rules: invoke autotools_dev
 .
   [ Charles Plessy ]
   * Switch to non-free section because of the locfit license (debian/control).
   * Added myself to Uploaders (debian/control).
   * Compress binary package with xz (debian/rules).
   * Pre-depend on dpkg (>= 1.15.6) for xz compression (Ubuntu LTS).
 .
 cufflinks (1.0.3-1) UNRELEASED; urgency=low
 .
   [ Alex Mestiashvili ]
   * added docs
   * added missing dependency
   * libbam-dev provides necessary headers only from 0.1.16 version .
     Fixed in control file.
 .
   [ Charles Plessy ]
   * Add debian/gbp.conf to show the package is managed with git-buildpackage.
   * Converted Debian copyright file to machine-readable format (DEP 5).
   * Reviewed copyright and license notices, and found that locfit is non-free…
 .
   [ Alex Mestiashvili ]
   * Imported Upstream version 1.0.3 (bugfix)
 .
 cufflinks (1.0.2-1) UNRELEASED; urgency=low
 .
   * Initial release (Closes: #627799)
Checksums-Sha1: 
 4a8c5a4bff46780f49925bea1e8d5a90309362b8 2201 cufflinks_1.2.1-1.dsc
 6439059aafd2bbbce582f027e2283f5886559d9d 673097 cufflinks_1.2.1.orig.tar.gz
 7b1b8adef9197957e9c43f7c726a61291cf618f4 11462 cufflinks_1.2.1-1.debian.tar.gz
 82b778d27077b8a045993694bc3a00897c6cf2fd 1002762 cufflinks_1.2.1-1_amd64.deb
Checksums-Sha256: 
 70b7b04ed32e54a8382182c87b60c42896d91fb85b670c6cfd3d01b2ad2b6e5f 2201 cufflinks_1.2.1-1.dsc
 aaf4ded5d255b554faf651e3d29e3ad3315314a21347db5d91f300dcaa1c334f 673097 cufflinks_1.2.1.orig.tar.gz
 4d49d636025fdf26cc1189bfdefc94016f9a4b9d27c1f59de6a40952bb3ab02e 11462 cufflinks_1.2.1-1.debian.tar.gz
 f258643f18d5fb5220167fbf4afd4834b2f5ed939f0f6df02561884b6dfdd42a 1002762 cufflinks_1.2.1-1_amd64.deb
Files: 
 0607a493f9dafb87261032b9f573d61f 2201 non-free/science optional cufflinks_1.2.1-1.dsc
 e99e208eedc8bb42136c0077b6cfc5c0 673097 non-free/science optional cufflinks_1.2.1.orig.tar.gz
 f365c08b47ad5400745688ae8224c279 11462 non-free/science optional cufflinks_1.2.1-1.debian.tar.gz
 164328360e1d7658c2d2eaee1e69f137 1002762 non-free/science optional cufflinks_1.2.1-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.10 (GNU/Linux)
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=RlBr
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: