Bug#631534: ITP: ABySS -- de novo, parallel, short-read assembler
Package: wnpp
Severity: wishlist
Package name: abyss
Version: 1.2.7
Upstream Author: sjackman@bcgsc.ca
URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss
License: free for academic use
Description: a de novo, parallel, paired-end sequence assembler
ABySS is a de novo, parallel, paired-end sequence assembler that is
designed for short reads. It may be used to assemble genome or
transcriptome sequence data. Parallelization is achieved using MPI,
OpenMP and pthread.
.
To cite your use of ABySS, please reference
ABySS: A parallel assembler for short read sequence data. Simpson JT,
Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. Genome Research,
2009-June.
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