Bug#627799: ITP: cufflinks -- Transcript assembly, differential expression and regulation for RNA-Seq

[Alex Mestiashvili <alex@biotec.tu-dresden.de>]

Package: wnpp
Severity: wishlist
Owner: Alex Mestiashvili<alex@biotec.tu-dresden.de>

* Package name    : cufflinks
  Version         : 1.0.2
  Upstream Author : Cole Trapnell
* URL             : http://cufflinks.cbcb.umd.edu
* License         : BSL-1
  Programming Lang: C++, Python
  Description     : Transcript assembly, differential expression and 
regulation for RNA-Seq
 Cufflinks assembles transcripts, estimates their abundances, and tests for
 differential expression and regulation in RNA-Seq samples. It accepts 
aligned
 RNA-Seq reads and assembles the alignments into a parsimonious set of
 transcripts. Cufflinks then estimates the relative abundances of these
 transcripts based on how many reads support each one.