[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#587275: marked as done (RFP: qiime -- Quantitative Insights Into Microbial Ecology)

Your message dated Tue, 19 Apr 2011 15:02:29 +0000
with message-id <E1QCCRh-00026T-4R@franck.debian.org>
and subject line Bug#587275: fixed in qiime 1.2.1-1
has caused the Debian Bug report #587275,
regarding RFP: qiime -- Quantitative Insights Into Microbial Ecology
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
587275: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=587275
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>

* Package name    : qiime
  Version         : 1.1.0
* URL             : http://qiime.sf.net
* License         : GPL
  Description     : Quantitative Insights Into Microbial Ecology

 QIIME (canonically pronounced ‘Chime’) is a pipeline for performing
 microbial community analysis that integrates many third party tools which
 have become standard in the field. A standard QIIME analysis begins with
 sequence data from one or more sequencing platforms, including Sanger,
 Roche/454, and Illumina GAIIx. With all the underlying tools installed,
 of which not all are yet available in Debian (or any other Linux
 distribution), QIIME can perform library de-multiplexing and quality
 filtering; denoising with PyroNoise; OTU and representative set picking
 with uclust, cdhit, mothur, BLAST, or other tools; taxonomy assignment
 with BLAST or the RDP classifier; sequence alignment with PyNAST, muscle,
 infernal, or other tools; phylogeny reconstruction with FastTree, raxml,
 clearcut, or other tools; alpha diversity and rarefaction, including
 visualization of results, using over 20 metrics including Phylogenetic
 Diversity, chao1, and observed species; beta diversity and rarefaction,
 including visualization of results, using over 25 metrics including
 weighted and unweighted UniFrac, Euclidean distance, and Bray-Curtis;
 summarization and visualization of taxonomic composition of samples
 using pie charts and histograms; and many other features.
 .
 QIIME includes parallelization capabilities for many of the
 computationally intensive steps. By default, these are configured to
 utilize a mutli-core environment, and are easily configured to run in
 a cluster environment. QIIME is built in Python using the open-source
 PyCogent toolkit. It makes extensive use of unit tests, and is highly
 modular to facilitate custom analyses.

--- End Message ---
--- Begin Message --- 
Source: qiime
Source-Version: 1.2.1-1

We believe that the bug you reported is fixed in the latest version of
qiime, which is due to be installed in the Debian FTP archive:

qiime_1.2.1-1.debian.tar.gz
  to contrib/q/qiime/qiime_1.2.1-1.debian.tar.gz
qiime_1.2.1-1.dsc
  to contrib/q/qiime/qiime_1.2.1-1.dsc
qiime_1.2.1-1_all.deb
  to contrib/q/qiime/qiime_1.2.1-1_all.deb
qiime_1.2.1.orig.tar.gz
  to contrib/q/qiime/qiime_1.2.1.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 587275@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Steffen Moeller <moeller@debian.org> (supplier of updated qiime package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Wed, 02 Mar 2011 18:19:39 +0100
Source: qiime
Binary: qiime
Architecture: source all
Version: 1.2.1-1
Distribution: experimental
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description: 
 qiime      - Quantitative Insights Into Microbial Ecology
Closes: 587275
Changes: 
 qiime (1.2.1-1) experimental; urgency=low
 .
   * Initial release (Closes: #587275)
   * Corrected home page
   * Updated policy to 3.9.1
   * Updated debian/README.Debian
Checksums-Sha1: 
 ad358acccf8192981461e98e1da35099c5e346ac 1402 qiime_1.2.1-1.dsc
 4750d74d131ea32a80700266fda42d693baebfaf 5551820 qiime_1.2.1.orig.tar.gz
 1c26183bae63fced4d390aa0eda750b0759a796e 3065 qiime_1.2.1-1.debian.tar.gz
 26ca8752a7101f46c9927d058723228eb194a3bc 5193758 qiime_1.2.1-1_all.deb
Checksums-Sha256: 
 022258bcd0d917482e958e2e9516d911011045516df430d4997587b603460881 1402 qiime_1.2.1-1.dsc
 fad9071a9357c7f16467ddd44cc9aba52f14424f260c91a656d9dfb7f13f82c8 5551820 qiime_1.2.1.orig.tar.gz
 1d71ba244c62ebe978c2ce5bb1db0146c9a1b69612359290e135109049996022 3065 qiime_1.2.1-1.debian.tar.gz
 0ae0da422643f01cf6fd840618c4a1bff4519edbfbc2f9a0323891d1e883001e 5193758 qiime_1.2.1-1_all.deb
Files: 
 2f6596368e90f6b7d5f59c3ceb325523 1402 contrib/science extra qiime_1.2.1-1.dsc
 bba2cf00145c45f74f1d6ac081b11b39 5551820 contrib/science extra qiime_1.2.1.orig.tar.gz
 253f2c333128a06dee91cb58051255bd 3065 contrib/science extra qiime_1.2.1-1.debian.tar.gz
 93e0f4c7ad8926f3612910494b778ced 5193758 contrib/science extra qiime_1.2.1-1_all.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)

iEYEARECAAYFAk1ufdgACgkQ1gXdnL6dUzmlWACgk515hJs5+2IVhbemsZCnWWMb
CKoAn2YnaDDPHTEbut0DphRSaUO/hxgc
=rEQ2
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: