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Bug#619100: marked as done (ITP: abacas -- Algorithm Based Automatic Contiguation of Assembled Sequences)

Your message dated Thu, 14 Apr 2011 22:32:54 +0000
with message-id <E1QAV5q-0002Nn-9f@franck.debian.org>
and subject line Bug#619100: fixed in abacas 1.3.1-1
has caused the Debian Bug report #619100,
regarding ITP: abacas -- Algorithm Based Automatic Contiguation of Assembled Sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
619100: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=619100
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: andreas@an3as.eu

* Package name    : abacas
  Version         : 1.3.1
  Upstream Author : Wellcome Trust Sanger Institute
* URL             : http://abacas.sourceforge.net/
* License         : GPL
  Programming Lang: Perl
  Description     : Algorithm Based Automatic Contiguation of Assembled Sequences
 ABACAS is intended to rapidly contiguate (align, order, orientate),
 visualize and design primers to close gaps on shotgun assembled contigs
 based on a reference sequence.
 .
 ABACAS uses MUMmer to find alignment positions and identify syntenies
 of assembled contigs against the reference. The output is then processed
 to generate a pseudomolecule taking overlapping contigs and gaps in to
 account. ABACAS generates a comparision file that can be used to
 visualize ordered and oriented contigs in ACT. Synteny is represented by
 red bars where colour intensity decreases with lower values of percent
 identity between comparable blocks. Information on contigs such as the
 orientation, percent identity, coverage and overlap with other contigs
 can also be visualized by loading the outputted feature file on ACT.

The packaging will be done in the Debian Med team and is available in SVN at

Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/abacas/trunk/


-- System Information:
Debian Release: squeeze/sid
  APT prefers oldstable
  APT policy: (500, 'oldstable'), (50, 'unstable')
Architecture: i386 (i686)

--- End Message ---
--- Begin Message --- 
Source: abacas
Source-Version: 1.3.1-1

We believe that the bug you reported is fixed in the latest version of
abacas, which is due to be installed in the Debian FTP archive:

abacas_1.3.1-1.debian.tar.gz
  to main/a/abacas/abacas_1.3.1-1.debian.tar.gz
abacas_1.3.1-1.dsc
  to main/a/abacas/abacas_1.3.1-1.dsc
abacas_1.3.1-1_all.deb
  to main/a/abacas/abacas_1.3.1-1_all.deb
abacas_1.3.1.orig.tar.gz
  to main/a/abacas/abacas_1.3.1.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 619100@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated abacas package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Mon, 21 Mar 2011 09:48:04 +0100
Source: abacas
Binary: abacas
Architecture: source all
Version: 1.3.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description: 
 abacas     - Algorithm Based Automatic Contiguation of Assembled Sequences
Closes: 619100
Changes: 
 abacas (1.3.1-1) unstable; urgency=low
 .
   * Initial release (Closes: #619100)
Checksums-Sha1: 
 57199b11b02b28293b2dc987c07043250c5f91f1 1269 abacas_1.3.1-1.dsc
 e967f1908409ab8c302d47823ae3cedac3b01e8b 22324 abacas_1.3.1.orig.tar.gz
 95dadabf95f86be55df470cadaa959270e398274 4050 abacas_1.3.1-1.debian.tar.gz
 c3d6886623c311892e2eadb9c3a3611732f7ed9d 26654 abacas_1.3.1-1_all.deb
Checksums-Sha256: 
 265bf0fae5998a794a83e3205b9c54b885a9565d165831018efd5e3307492990 1269 abacas_1.3.1-1.dsc
 0404461e441506437cd2da01a9eacc147705091c0719da47cc298eb13e362509 22324 abacas_1.3.1.orig.tar.gz
 cbf21dee113e6b3242049e8f9e2ab7dd4359673c23b535d86f39bed8e14090a4 4050 abacas_1.3.1-1.debian.tar.gz
 ad907f470e9e381ed5b25be77ff46beb81492c27a32d8b2a67fb249e0551ba33 26654 abacas_1.3.1-1_all.deb
Files: 
 9958ce507b4180d10113a8040541ce08 1269 science optional abacas_1.3.1-1.dsc
 169a6e73cd13b4294541f32fa3afe9d4 22324 science optional abacas_1.3.1.orig.tar.gz
 7dfa778d9a99f8cf655c65b570b309e5 4050 science optional abacas_1.3.1-1.debian.tar.gz
 be90ac0af73a3adcbd0fd5dd645a1aba 26654 science optional abacas_1.3.1-1_all.deb

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--- End Message ---
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