[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#606446: marked as done (ITP: tabix -- generic indexer for TAB-delimited genome position files)

Your message dated Wed, 16 Mar 2011 10:32:33 +0000
with message-id <E1Pzo1p-0005Sq-Pm@franck.debian.org>
and subject line Bug#606446: fixed in tabix 0.2.3-1
has caused the Debian Bug report #606446,
regarding ITP: tabix -- generic indexer for TAB-delimited genome position files
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
606446: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=606446
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

  Package name    : tabix
  Version         : 0.2.3
  Upstream Author : Heng Li <lh3@live.co.uk>
  URL             : http://samtools.sourceforge.net/tabix.shtml
  License         : MIT/X
  Programming Lang: C, plus some Java, python and Perl bindings
  Description     : generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosme), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.


A draft package is available here:

  Vcs-Git: git://git.debian.org/debian-med/tabix.git
  Vcs-Browser: http://git.debian.org/?p=debian-med/tabix.git;a=summary

I update the draft from time to time when I use it at work, and will
eventually upload it ‘when it is ready’.

Do not hesitate to express your interest in it, and I will fast-track it.

Have a nice day,

-- 
Charles

--- End Message ---
--- Begin Message --- 
Source: tabix
Source-Version: 0.2.3-1

We believe that the bug you reported is fixed in the latest version of
tabix, which is due to be installed in the Debian FTP archive:

tabix_0.2.3-1.debian.tar.gz
  to main/t/tabix/tabix_0.2.3-1.debian.tar.gz
tabix_0.2.3-1.dsc
  to main/t/tabix/tabix_0.2.3-1.dsc
tabix_0.2.3-1_amd64.deb
  to main/t/tabix/tabix_0.2.3-1_amd64.deb
tabix_0.2.3.orig.tar.bz2
  to main/t/tabix/tabix_0.2.3.orig.tar.bz2



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 606446@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated tabix package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 19 Jan 2011 22:16:39 +0900
Source: tabix
Binary: tabix
Architecture: source amd64
Version: 0.2.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 tabix      - generic indexer for TAB-delimited genome position files
Closes: 606446
Changes: 
 tabix (0.2.3-1) unstable; urgency=low
 .
   * Initial release (Closes: #606446)
Checksums-Sha1: 
 5d316c14341a615d0c34c396399f5b5c2b3b548a 1882 tabix_0.2.3-1.dsc
 c00ad878c4377154befeb3993996220c5b5cfafe 46352 tabix_0.2.3.orig.tar.bz2
 21ea592206660a2d2bb06c6d3f2c48f554b3f323 2130 tabix_0.2.3-1.debian.tar.gz
 abcdd5a1949907c583f63c0c16c324c4acdc67e9 46772 tabix_0.2.3-1_amd64.deb
Checksums-Sha256: 
 4b215753651fecd6c746577def56101d29706628fc01ea2c35555185002dad0e 1882 tabix_0.2.3-1.dsc
 58d3307541cd0409a8d8dbed29bb45f1c386878adb35185e5414378c27b30efc 46352 tabix_0.2.3.orig.tar.bz2
 84cf904102bc9b3b297af34c186e4ee5ed090d07c3629adffc03e33cda52c53f 2130 tabix_0.2.3-1.debian.tar.gz
 3c35d04d4d2b7dbd97e7bec81d00acbb76511745f3e5214b1735ba2d261b0bca 46772 tabix_0.2.3-1_amd64.deb
Files: 
 ea252ca54177980ece0d6658f75b3651 1882 science optional tabix_0.2.3-1.dsc
 54ee704cfe599dd5c33dfdf26629a48a 46352 science optional tabix_0.2.3.orig.tar.bz2
 f81ae88e928e94999401e7c981ee462d 2130 science optional tabix_0.2.3-1.debian.tar.gz
 d6c1f21ee03eae89cd57b4f3f1a5ad22 46772 science optional tabix_0.2.3-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.10 (GNU/Linux)
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=y926
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: