Bug#614382: ITP: transtermhp -- Finds rho-independent transcription terminators in bacterial genomes.
Package: wnpp
Owner: Alex Mestiashvili <alex@biotec.tu-dresden.de>
Severity: wishlist
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* Package name : transtermhp
Version : 2.0.7
Upstream Author : Carl Kingsford
* URL : http://transterm.cbcb.umd.edu/
* License : GPL
Programming Lang: C++
Description : Finds rho-independent transcription terminators in
bacterial genomes.
TransTermHP finds rho-independent transcription terminators in
bacterial genomes. Each terminator found by the program is assigned a
confidence value that estimates its probability of being a true
terminator. TransTermHP is described in:
.
C. Kingsford, K. Ayanbule and S.L. Salzberg. Rapid, accurate,
computational discovery of Rho-independent transcription terminators
illuminates their relationship to DNA uptake. Genome Biology 8:R22
(2007).
.
A predecessor system, TransTerm, that used very different search and
scoring algorithms is described in:
.
Maria D. Ermolaeva, Hanif G. Khalak, Owen White, Hamilton O. Smith and
Steven L. Salzberg. Prediction of Transcription Terminators in Bacterial
Genomes. J Mol Biol 301, (1), 27-33 (2000)
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