Bug#550954: marked as done (ITP: alien-hunter -- Interpolated Variable Order Motifs to identify horizontally acquired DNA)
Your message dated Sat, 17 Oct 2009 15:46:17 +0000
with message-id <E1MzBU1-0001fh-Sf@ries.debian.org>
and subject line Bug#550954: fixed in alien-hunter 1.7-1
has caused the Debian Bug report #550954,
regarding ITP: alien-hunter -- Interpolated Variable Order Motifs to identify horizontally acquired DNA
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
550954: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=550954
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tillea@rki.de>
* Package name : alien-hunter
Version : 1.7
Upstream Author : George Vernikos
* URL : http://www.sanger.ac.uk/Software/analysis/alien_hunter/
* License : GPL
Programming Lang: Perl, Java
Description : Interpolated Variable Order Motifs to identify horizontally acquired DNA
Alien_hunter is an application for the prediction of putative
Horizontal Gene Transfer (HGT) events with the implementation of
Interpolated Variable Order Motifs (IVOMs). An IVOM approach
exploits compositional biases using variable order motif distributions
and captures more reliably the local composition of a sequence compared
to fixed-order methods. Optionally the predictions can be parsed into a
2-state 2nd order Hidden Markov Model (HMM), in a change-point detection
framework, to optimize the localization of the boundaries of the
predicted regions. The predictions (embl format) can be automatically
loaded into Artemis genome viewer freely available at:
http://www.sanger.ac.uk/Software/Artemis/.
.
The manuscript describing the alien_hunter algorithm is available
from Bioinformatics: Interpolated variable order motifs for
identification of horizontally acquired DNA: revisiting the
Salmonella pathogenicity islands. Vernikos GS, Parkhill J
Bioinformatics. 2006;. PMID: 16837528
I intend to maintain this package in the Debian Med Packaging Team.
Packaging stuff is just commited to
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/alien-hunter/trunk/
--- End Message ---
--- Begin Message ---
Source: alien-hunter
Source-Version: 1.7-1
We believe that the bug you reported is fixed in the latest version of
alien-hunter, which is due to be installed in the Debian FTP archive:
alien-hunter_1.7-1.diff.gz
to pool/main/a/alien-hunter/alien-hunter_1.7-1.diff.gz
alien-hunter_1.7-1.dsc
to pool/main/a/alien-hunter/alien-hunter_1.7-1.dsc
alien-hunter_1.7-1_all.deb
to pool/main/a/alien-hunter/alien-hunter_1.7-1_all.deb
alien-hunter_1.7.orig.tar.gz
to pool/main/a/alien-hunter/alien-hunter_1.7.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 550954@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated alien-hunter package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 14 Oct 2009 11:41:51 +0200
Source: alien-hunter
Binary: alien-hunter
Architecture: source all
Version: 1.7-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
alien-hunter - Interpolated Variable Order Motifs to identify horizontally acqui
Closes: 550954
Changes:
alien-hunter (1.7-1) unstable; urgency=low
.
* Initial release (Closes: #550954)
Checksums-Sha1:
21429ec89a79dbc93c987c6ba653fce915cf44d1 1349 alien-hunter_1.7-1.dsc
a795d25b65bda497f3bc58054bbd6ad96554b5de 26070 alien-hunter_1.7.orig.tar.gz
df768f5a33d002ddecd180afc9b583787c35eb01 3700 alien-hunter_1.7-1.diff.gz
2f90ab2be15c6900176cbbfbf949f9e5cac0d933 30470 alien-hunter_1.7-1_all.deb
Checksums-Sha256:
2016ba9a6abb3ebd3f4136762e60457200a3c8d0b2ba28e634e034c5dbae1356 1349 alien-hunter_1.7-1.dsc
fae4d3f31166e69acc7119c37a34b69ca6aad9a981c454c42d3c0773456e783f 26070 alien-hunter_1.7.orig.tar.gz
58625b7b9af62bddbb6ab19472efede32029f524cb1f5cb4c717fd5ed9cc93d3 3700 alien-hunter_1.7-1.diff.gz
b14a9d86c15c81d52de9a4fec0d6e95b44b4c098c92a744223bcb22a977bc1d0 30470 alien-hunter_1.7-1_all.deb
Files:
652be80dec9b46bc081dc1f7b2a708a8 1349 science optional alien-hunter_1.7-1.dsc
d08b0698e4a0e642959267c9f1ca0988 26070 science optional alien-hunter_1.7.orig.tar.gz
39a6ed93d3d8c39e7f6c881cfee7f2b9 3700 science optional alien-hunter_1.7-1.diff.gz
c4c9dbbf5c191a6586b1b260c89fbca0 30470 science optional alien-hunter_1.7-1_all.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.10 (GNU/Linux)
iEYEARECAAYFAkrWO6MACgkQYDBbMcCf01rsrACcDceApstPy1u178JpH8fi8FJX
USEAn1YiCgCKFyEMehlvv5W6cDIfc9ki
=o9uv
-----END PGP SIGNATURE-----
--- End Message ---
Reply to: