Bug#548719: ITP: bwa -- Burrows-Wheeler Aligner
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>
Package name : bwa
Version : 0.5.3
Upstream Author : Heng Li and others, see: http://bio-bwa.sourceforge.net/bwa.shtml
URL : http://bio-bwa.sourceforge.net
License : GPL
Programming Lang: C
Description : Burrows-Wheeler Aligner
Since I tried it at work, I took the opportunity to package bwa, the
Burrows-Wheeler Aligner. Here are copies of the Debian control and
copyright files.
Have a nice day,
-- Charles Plessy, Debian Med packaging team, Tsurumi, Kanagawa, Japan.
Source: bwa
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Build-Depends: cdbs, debhelper (>= 7), zlib1g-dev
Standards-Version: 3.8.3
Homepage: http://bio-bwa.sourceforge.net/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bwa/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bwa/trunk/
Package: bwa
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Suggests: samtools
Description: Burrows-Wheeler Aligner
Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short
nucleotide sequences against a long reference sequence such as the human
genome. It implements two algorithms, bwa-short and dBWT-SW. The former works
for query sequences shorter than 200 bp and the latter for longer sequences up
to around 100 kbp. Both algorithms do gapped alignment. They are usually more
accurate and faster on queries with low error rates.
Name : Burrows-Wheeler Aligner
Contact : bio-bwa-help@lists.sourceforge.net
Source : http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.3.tar.bz2
Copyright : © 2008 Genome Research Ltd (GRL)
2008, by Heng Li <lh3@sanger.ac.uk>
© 2003-2006, 2008, 2009, by Heng Li <lh3lh3@gmail.com>
© 2008, by Attractive Chaos <attractivechaos@aol.co.uk>
© 2008 Yuta Mori
License : MIT
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
Files : bwt_gen/bwt_gen.*
Copyright : © 2004, Wong Chi Kwong
License : GPL-2+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
Files : bwt_gen/QSufSort.*
Copyright : 1999, N. Jesper Larsson
License :
This software may be used freely for any purpose. However, when distributed,
the original source must be clearly stated, and, when the source code is
distributed, the copyright notice must be retained and any alterations in
the code must be clearly marked. No warranty is given regarding the quality
of this software.
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