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Bug#537204: marked as done (ITP: embassy-domsearch -- Extra EMBOSS commands to search for protein domains)

Your message dated Sat, 15 Aug 2009 13:17:03 +0000
with message-id <E1McJ83-0004NJ-5R@ries.debian.org>
and subject line Bug#537204: fixed in embassy-domsearch 0.1.0+20980715-1
has caused the Debian Bug report #537204,
regarding ITP: embassy-domsearch -- Extra EMBOSS commands to search for protein domains
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
537204: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=537204
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

Dear all,

15th of July is the traditional EMBOSS release (EMBOSS is a set of command line
tools for molecular biologists). Two satellite packages are already present in
Debian and here is the ITP for a third. Package structure is trivial and upload
will follow shortly. It will not add to my long list of work-in-progress ITPs.

  Package name    : embassy-domsearch
  Version         : 0.1.0 (+20980715)
  Upstream Author : Jon Ison (jison@ebi.ac.uk) and collaborators.
  URL             : http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
  License         : GPL-2+
  Programming Lang: C
  Description     : Extra EMBOSS commands to search for protein domains


debian/copyright
----------------

Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’;.

Name    :  DOMAINATRIX
Contact :  Jon Ison (jison@ebi.ac.uk)
Source  :  ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.0.tar.gz

Copyright: Jon Ison (jison@ebi.ac.uk), Matt Blades, Ranjeeva Ranasinghe.

License: GPL-2+
    This package is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; either version 2 of the License, or
    (at your option) any later version.
    
    This package is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
    
    You should have received a copy of the GNU General Public License
    along with this package; if not, write to the Free Software
    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA

On Debian systems, the complete text of the GNU General Public License version 2 can be
found in ‘/usr/share/common-licenses/GPL-2’.



debian/control
--------------

Source: embassy-domsearch
Section: science
Priority: optional
Build-Depends: cdbs, debhelper (>= 7), libajax6-dev, libnucleus6-dev, emboss-lib, libx11-dev, libgd2-xpm-dev
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domsearch/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domsearch/trunk/
Standards-Version: 3.8.2
Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH

Package: embassy-domsearch
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Recommends: emboss
Suggests: embassy
Description: Extra EMBOSS commands to search for protein domains
 The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP
 for their protein domain research. They are included as an EMBASSY package as
 a work in progress.
 .
 Applications in this DOMSEARCH release are seqfraggle (removes fragment
 sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch
 (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove
 ambiguous classified sequences from DHF files) and seqwords (Generates DHF
 files from keyword search of UniProt).


I will upload the source package to the debian-med Subversion repository after
I escape from a strange svn bug that crashes my machine when doing ‘svn mv’.

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan

--- End Message ---
--- Begin Message --- 
Source: embassy-domsearch
Source-Version: 0.1.0+20980715-1

We believe that the bug you reported is fixed in the latest version of
embassy-domsearch, which is due to be installed in the Debian FTP archive:

embassy-domsearch_0.1.0+20980715-1.diff.gz
  to pool/main/e/embassy-domsearch/embassy-domsearch_0.1.0+20980715-1.diff.gz
embassy-domsearch_0.1.0+20980715-1.dsc
  to pool/main/e/embassy-domsearch/embassy-domsearch_0.1.0+20980715-1.dsc
embassy-domsearch_0.1.0+20980715-1_amd64.deb
  to pool/main/e/embassy-domsearch/embassy-domsearch_0.1.0+20980715-1_amd64.deb
embassy-domsearch_0.1.0+20980715.orig.tar.gz
  to pool/main/e/embassy-domsearch/embassy-domsearch_0.1.0+20980715.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 537204@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated embassy-domsearch package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Mon, 20 Jul 2009 10:43:26 +0900
Source: embassy-domsearch
Binary: embassy-domsearch
Architecture: source amd64
Version: 0.1.0+20980715-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 embassy-domsearch - Extra EMBOSS commands to search for protein domains
Closes: 537204
Changes: 
 embassy-domsearch (0.1.0+20980715-1) unstable; urgency=low
 .
   * Initial release (Closes: #537204).
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 d97915b4bde1c79c172e3c7c2380c3cab3045bf4 443681 embassy-domsearch_0.1.0+20980715.orig.tar.gz
 8d31ff97eb4d97adca337a3e34229b456e175f31 5650 embassy-domsearch_0.1.0+20980715-1.diff.gz
 8f91b6cc8b02521cff7aae85c85f7eb3542b1d4c 122616 embassy-domsearch_0.1.0+20980715-1_amd64.deb
Checksums-Sha256: 
 79d8265fed5b5e7942046af42d66ca8331ecab0476a0c1415d229d65e46b7453 1534 embassy-domsearch_0.1.0+20980715-1.dsc
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 6131f14f1b8bbe6ad1acead33359d2c4701411851e9191f53f374ba7fb5cb149 122616 embassy-domsearch_0.1.0+20980715-1_amd64.deb
Files: 
 0c97a49d7ff6723b27a3c579bcb18352 1534 science optional embassy-domsearch_0.1.0+20980715-1.dsc
 31bb85afe67a60a46a6a9ee41dd535e0 443681 science optional embassy-domsearch_0.1.0+20980715.orig.tar.gz
 9b803a531f112d03dc58777f3f2ae33a 5650 science optional embassy-domsearch_0.1.0+20980715-1.diff.gz
 ec67ef2882e8fe8fbda86674abac2887 122616 science optional embassy-domsearch_0.1.0+20980715-1_amd64.deb

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--- End Message ---
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