Bug#506752: ITP: ssake -- assembling millions of very short DNA sequences

[Andreas Tille <tillea@rki.de>]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tillea@rki.de>

* Package name    : ssake
  Version         : 3.2.1
  Upstream Author : Rene Warren <rwarrens * bcgsc.ca>
* URL             : http://www.bcgsc.ca/platform/bioinfo/software/ssake
* License         : GPL 2+
  Programming Lang: Perl
  Description     : assembling millions of very short DNA sequences
 SSAKE is a genomics application for assembling millions of very short
 DNA sequences.
 .
 The Short Sequence Assembly by K-mer search and 3' read Extension
 (SSAKE) is a genomics application for aggressively assembling
 millions of short nucleotide sequences by progressively searching for
 perfect 3'-most k-mers using a DNA prefix tree. SSAKE is designed to
 help leverage the information from short sequences reads by
 stringently clustering them into contigs that can be used to
 characterize novel sequencing targets.

Preliminary packaging stuff can be found at
  Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ssake/trunk/

-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (501, 'testing'), (50, 'unstable'), (5, 'experimental')
Architecture: i386 (i686)