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Bug#425111: marked as done (ITP: ssaha -- Sequence Search and Alignment by Hashing Algorithm)

Your message dated Sat, 24 May 2008 11:59:36 -0600
with message-id <E1Jzy1o-000622-Gp@merkel.debian.org>
and subject line WNPP bug closing
has caused the Debian Bug report #425111,
regarding ITP: ssaha -- Sequence Search and Alignment by Hashing Algorithm
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
425111: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=425111
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : ssaha
  Version         : 3.3
  Upstream Author : Anthony J. Cox <anthony.j.cox@talk21.com>
  URL             : http://groups.yahoo.com/group/ssahausers/files/ssaha_v33.tar.gz
  License         : GPL
  Programming Lang: C++
  Description     : Sequence Search and Alignment by Hashing Algorithm

 SSAHA is a software tool for very fast matching and alignment of DNA
 sequences. It achieves its fast search speed by converting sequence
 information into a `hash table' data structure, which can then be
 searched very rapidly for matches. It was published by Ning Z,
 Cox AJ, Mullikin JC in Genome Res. 2001;11;1725-9.
 .
  Homepage: http://www.sanger.ac.uk/Software/analysis/SSAHA/

SSAHA is the only free software of its category (fast search of nearly
indentical sequences). The popular alternative, BLAT, is restricted to
non-commercial use.

Only version 3.3 can be build with gcc 4.1 ; it was released on the
SSAHA users mailing list, hence the strange URL.

I will first finish the work on two other ITPs (mirbase, mafft) before
undertaking this one. Do not hesitate to hijack it if you want to get
things done faster !

-- System Information:
Debian Release: 4.0
  APT prefers testing
  APT policy: (500, 'testing'), (500, 'stable'), (1, 'experimental')
Architecture: powerpc (ppc64)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.18-4-powerpc64
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)

--- End Message ---
--- Begin Message --- 
Hello,

This is an automatic mail sent to close the ITP you have reported or 
are involved with.

Your ITP wnpp bug is being closed because of the following reasons:
- It is, as of today, older than 365 days.
- It hasn't had any activity recently.

As this is an automatic procedure, it could of course have something
wrong and probably it would be closing some bugs that are not 
intended by owners and submitters (like you) to be closed, for
example if the ITP is still of your interest, or there has been 
some kind of activity around it. In that case, please reopen the
bug, do it, DO IT NOW! (I don't want to be blamed because of
mass closing and not let people know that they can easily reopen
their bugs ;-).

To re-open it, you simply have to mail control@bugs.debian.org
with a body text like this:

 reopen 425111
 stop

Further comments on the work done in the bug sent to
425111@bugs.debian.org would be truly welcomed.
Anyway, if you have any kind of problems when dealing with
the BTS, feel free to contact me and I'd be more than happy to help
you on this: <damog@debian.org>.

A similar process is being applied to other kind of wnpp bugs.

Thanks for your cooperation,

 -- David Moreno Garza <damog@debian.org>.

--- End Message ---
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