[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#406286: marked as done (ITP: sibsim4 -- align expressed RNA sequences on a DNA template)

Your message dated Fri, 09 Feb 2007 18:41:37 +0000
with message-id <E1HFagj-0003Mn-IT@ries.debian.org>
and subject line Bug#406286: fixed in sibsim4 0.14-1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: "Nelson A. de Oliveira" <naoliv@debian.org>

* Package name    : sibsim4
  Version         : 0.14
  Upstream Author : Christian Iseli <Christian.Iseli@licr.org>
* URL             : http://sibsim4.sourceforge.net/
* License         : GNU GPL
  Programming Lang: C
  Description     : align expressed RNA sequences on a DNA template

 The SIBsim4 project is based on sim4, which is a program designed to align
 an expressed DNA sequence with a genomic sequence, allowing for introns.
 SIBsim4 is a fairly extensive rewrite of the original code with the following
 goals:
  * speed improvement;
  * allow large, chromosome scale, DNA sequences to be used;
  * provide more detailed output about splice types;
  * provide more detailed output about polyA sites;
  * misc code cleanups and fixes

-- System Information:
Debian Release: 4.0
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/dash
Kernel: Linux 2.6.19-beyond2
Locale: LANG=pt_BR.UTF-8, LC_CTYPE=pt_BR.UTF-8 (charmap=UTF-8)

--- End Message ---
--- Begin Message --- 
Source: sibsim4
Source-Version: 0.14-1

We believe that the bug you reported is fixed in the latest version of
sibsim4, which is due to be installed in the Debian FTP archive:

sibsim4_0.14-1.diff.gz
  to pool/main/s/sibsim4/sibsim4_0.14-1.diff.gz
sibsim4_0.14-1.dsc
  to pool/main/s/sibsim4/sibsim4_0.14-1.dsc
sibsim4_0.14-1_i386.deb
  to pool/main/s/sibsim4/sibsim4_0.14-1_i386.deb
sibsim4_0.14.orig.tar.gz
  to pool/main/s/sibsim4/sibsim4_0.14.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 406286@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nelson A. de Oliveira <naoliv@debian.org> (supplier of updated sibsim4 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Wed, 10 Jan 2007 02:13:20 -0200
Source: sibsim4
Binary: sibsim4
Architecture: source i386
Version: 0.14-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Nelson A. de Oliveira <naoliv@debian.org>
Description: 
 sibsim4    - align expressed RNA sequences on a DNA template
Closes: 406286
Changes: 
 sibsim4 (0.14-1) unstable; urgency=low
 .
   * Initial release (Closes: #406286).
Files: 
 7873745b0c00edf86f1b9c9519c28a43 651 science optional sibsim4_0.14-1.dsc
 b63af91d9cacf7d4f557d72119f934e5 28956 science optional sibsim4_0.14.orig.tar.gz
 59b8b2cb5b462b1a1406f5234a397786 1987 science optional sibsim4_0.14-1.diff.gz
 ca23add95b9a6259329a1fea12f95f15 29634 science optional sibsim4_0.14-1_i386.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.6 (GNU/Linux)

iD8DBQFFpIQIAQwuptkwlkQRApkTAJ9KiW/La4Fa5aUnjT64MKqhxaOiVQCdHYQI
UCs+b0Kb7K9ec0AVFxlsDg0=
=cpcs
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: