--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Michael Hanke <michael.hanke@gmail.com>
* Package name : fsl
Version : 3.2
Upstream Author : Analysis Group, FMRIB, Oxford, UK. <FSL@JISCMAIL.AC.UK>
* URL : http://www.fmrib.ox.ac.uk/fsl/
* License : non-free (see
http://www.fmrib.ox.ac.uk/fsl/fsl/licence.html)
Description : analysis tools for FMRI, MRI and DTI brain imaging
The package is far from being ready. Although there is a
*very preliminary* version of the package here:
http://apsy.gse.uni-magdeburg.de/~hanke/debian/fsl/
it will take several weeks or even months before there is a proper package.
I'm posting this bug report, because it would by a huge waste of time if
someone would duplicate this work.
There are several open issues: e.g. upstream ships several libs that are
available as proper Debian packages and all those libs all linked
statically to a pretty large number of binaries.
If someone is interested in contributing to this packaging attempt,
please contact me.
-- System Information:
Debian Release: 3.1
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.11-9-amd64-k8
Locale: LANG=de_DE@euro, LC_CTYPE=de_DE@euro (charmap=ISO-8859-15)
--- End Message ---
--- Begin Message ---
Source: fsl
Source-Version: 4.0.2-2
We believe that the bug you reported is fixed in the latest version of
fsl, which is due to be installed in the Debian FTP archive:
fsl-doc_4.0.2-2_all.deb
to pool/non-free/f/fsl/fsl-doc_4.0.2-2_all.deb
fsl_4.0.2-2.diff.gz
to pool/non-free/f/fsl/fsl_4.0.2-2.diff.gz
fsl_4.0.2-2.dsc
to pool/non-free/f/fsl/fsl_4.0.2-2.dsc
fsl_4.0.2-2_i386.deb
to pool/non-free/f/fsl/fsl_4.0.2-2_i386.deb
fsl_4.0.2.orig.tar.gz
to pool/non-free/f/fsl/fsl_4.0.2.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 332666@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Hanke <michael.hanke@gmail.com> (supplier of updated fsl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
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Hash: SHA1
Format: 1.7
Date: Fri, 21 Dec 2007 10:56:09 +0100
Source: fsl
Binary: fsl fsl-doc
Architecture: source i386 all
Version: 4.0.2-2
Distribution: unstable
Urgency: low
Maintainer: Yaroslav Halchenko <debian@onerussian.com>
Changed-By: Michael Hanke <michael.hanke@gmail.com>
Description:
fsl - analysis tools for FMRI, MRI and DTI brain imaging
fsl-doc - documentation for FSL
Closes: 332666
Changes:
fsl (4.0.2-2) unstable; urgency=low
.
* Refurbished debian/rules. Now honours 'noopt' and builds with debugging
symbols by default.
* Make Debian diff less intrusive by moving more logic into debian/rules.
* Improve LD_LIBRARY_PATH handling by preventing trailing colons.
* Let fsl-doc depend on fslview-doc to prevent dangling symlink.
* Fixed location of lintian override.
* Updated and completed list of licenses in debian/copyright.
* Removed empty directories from the fsl-doc package.
* Placed fsl-doc package in section non-free/doc.
* Bumped Standard version to 3.7.3 -- no changes necessary.
.
fsl (4.0.2-1) unstable; urgency=low
.
* New upstream bugfix release.
- Susan: multiple performance improvements
- SienaX: bugfix in sienax regarding the -lm option
- Avwutils: minor fixes to fslmaths and fslsplit
- Feat5: multiple minor fixes
- Film: minor fix
- Flame: bugfix in the multiple-group-variances estimation
- Fdt: minor changes and fixes
- Miscvis: fixed Renderstats gui
* Use new-style Homepage field in debian/control.
* Replace deprecated 'Source-Version' substvar with 'source:Version' in
debian/control.
* Removed executable permissions from all '.gif' files.
.
fsl (4.0.1-3) unstable; urgency=low
.
* Added bc and dc to the dependencies.
* Adjusted package build-deps to new libfftw3-dev package in Debian lenny.
.
fsl (4.0.1-2) unstable; urgency=low
.
* Added a lintian override for the Runtcl syntax warning. This file is
actually a mixed sh and tclsh script.
.
fsl (4.0.1-1) unstable; urgency=low
.
* New upstream bugfix release.
* BET can now store the brain surface in VTK format.
.
fsl (4.0.0-2) unstable; urgency=low
.
* Bugfix: fsl_sub made use of non-POSIX operator while interpreter was set
to /bin/sh. This caused the script to fail on Ubuntu systems that have
dash as their default shell.
.
fsl (4.0.0-1) unstable; urgency=low
.
* New upstream release.
* Repackaged the FSL source tarball due to its size and the mixture of
licenses and split it into three independent source packages: 'fsl' contains
all non-free source code, 'fslview' contains FSLView and all other
DFSG-compliant sources and 'fsldata' contains the arch-independent datasets
(>900MB).
* Conflict with old fsl-fslview package and depend on the successor
'fslview'.
* Debian diff is now handled with a GIT repository. Build-dependency to
dpatch is obsolete.
* All internal libraries are compiled as shared libraries with
-W,l--no-undefined to be able to detect unresolved symbols that have been
an issue in the past. This also reduces the size of the binary package
significantly.
* FSL now uses libfslio, libniftiio and the im* tools from the corresponding
Debian packages instead of a compiling a local copy.
* Added 'dicomnifti' to the list of the suggested packages.
* Removed obsolete runtime dependency to tix, imagemagick and gnuplot.
.
fsl (3.3.11-2) unstable; urgency=low
.
* Removed manpage links of FSL internal cmdline tools to prevent namespace
conflicts.
* Disabled FSL developer variables in /etc/fsl/fsl.conf to prevent error
messages when the file is sourced, but no compiler is installed.
* Added wrapper script (similar to ssh-argv0) to be able to automatically
source the FSL configuration on startup. This adds the opportunity to
include menu and .desktop files.
* Add proper menu and .desktop files for all FSL GUI applications.
* Added build-depend on imagemagick to be able to generate a 32x32 icon for
the FSL menu entries from included artwork.
* Renamed fsl config file from fsl.conf to fsl.sh. This is done to reduce
the differences between upstream releases and the Debian package.
A preinst script was added to move old config files on package upgrades.
The new behavior is noted in debian/NEWS.
* Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control.
* Added comments about the CEPHES and Susan licensing to debian/copyright.
* Added a link to the FSLView binary to /usr/share/fsl/bin, because Nudge
was complaining about not beeing able to find it. Thanks to Yaroslav
Halchenko for pointing at this issue.
* Added manpage for fslview.
.
fsl (3.3.11-1) unstable; urgency=low
.
* New upstream release. Fixes another minor randomize bug.
.
fsl (3.3.10-1) unstable; urgency=low
.
* New upstream release. Fixes a bug in randomise.
.
fsl (3.3.9-1) unstable; urgency=low
.
* New upstream release.
.
fsl (3.3.8-1) unstable; urgency=low
.
* New upstream release.
* Minor bugfixes fixes to avwmerge++ and avwmaths++.
* Modified FSLView makefile to fix FTBFS due to missing fslio linrary.
* Added debian/backports to the source package. It contains a patch that
disables the fslview package when backporting to sarge using pbuilder-ssh.
.
fsl (3.3.7-3) unstable; urgency=low
.
* Added missing changelog entries for 3.3.7-2.
* Renamed the fsl-sbrain package to fsl-data.
* Added missing licenses to debian/copyright.
* Moved default FEAT configuration to /etc/fsl.
* Temporarily added libvtk5-qt3 to the build-depends to work-around
bug #389521.
.
fsl (3.3.7-2) unstable; urgency=low
.
* Include FSLView docs in the fsl-doc package.
* Added patch to fix FTBFS due to an issue with template instantiation.
Thanks to Yaroslav Halchenko.
* Minor enhancement for FSLView compilation (force Qt3 with Qt4 also
present).
* Fixed missing example_FA_target in $FSLDIR/etc/standard.
.
fsl (3.3.7-1) unstable; urgency=low
.
* New upstream release.
* Added FSLView package.
.
fsl (3.3.6-2) unstable; urgency=low
.
* Bumped Standards-Version to 3.7.2; no changes necessary.
.
fsl (3.3.6-1) unstable; urgency=low
.
* New upstream release.
.
fsl (3.3.5-2) unstable; urgency=low
.
* Added patch for gcc4.1 compatibility (Thanks to Mark Jenkinson).
.
fsl (3.3.5-1) unstable; urgency=low
.
* New upstream release
.
fsl (3.3.4-1) unstable; urgency=low
.
* New upstream release (missed 3.3.3). FSLView source code is now included,
but FSLView still cannot be build, because it build-depends on VTK 5.0.
No Debian package of this version is currently available.
* Added build conflict to libnifti0-dev. FSL sources contain an incompatible
fork of this library. This situation should vanish with the next major
release.
.
fsl (3.3.2-1) unstable; urgency=low
.
* New upstream release.
* Moved all binaries to /usr/lib/fsl after experiencing name clashes with
other packages.
.
fsl (3.3.0-1) unstable; urgency=low
.
* New upstream version.
* Split standard space brain data into a separate package.
* Made matlab m-files available for Octave.
.
fsl (3.2beta-4) unstable; urgency=low
.
* Added the possibility to define additional compiler flags for
arch-dependend optimization by defining them in the DEB_ARCH_OPT_FLAGS
environment variable.
.
fsl (3.2beta-3) unstable; urgency=low
.
* Split the dpatch patches into several smaller parts.
* Added patches to replace most of the deprecated headers.
* Improved patch to FAST for GCC4 compatiility.
* Removed libcprob and newran from the tarball, since they are unnecessary
for building FSL.
* Added patch to libvis that makes it possible to use a dependency to the
official Debian libgdchart-gd2 package instead of compiling the custom
version from the FSL source tarball.
* Switch package dependency for newmat to a package that provides a shared
library (Thanks to Philippe Coval).
.
fsl (3.2beta-2) unstable; urgency=low
.
* Added build-dependency to libnewmat10-dev and stopped compiling the
included version.
.
fsl (3.2beta-1) unstable; urgency=low
.
* Initial Release (Closes: #332666).
* Upstream tarball was repackaged, because it contained lots of binaries of
software available as proper Debian packages (see get-orig-source target
in debian/rules).
* Includes some fixes for compatibility with GCC4 (thanks to Andre Piel).
Files:
88bf55dd678a9d48f1d1b931bcc9558e 1099 non-free/science optional fsl_4.0.2-2.dsc
f9fd98bb6d6c2bb16fc21e069cfb2946 12686495 non-free/science optional fsl_4.0.2.orig.tar.gz
e91171307c2377884101ef32f2dcb34b 21034 non-free/science optional fsl_4.0.2-2.diff.gz
5c0cd6daad575fd9792179bff29b7ffb 8456522 non-free/science optional fsl_4.0.2-2_i386.deb
548d57d50031739b2c3d3ecfbe1f8433 9002562 non-free/doc optional fsl-doc_4.0.2-2_all.deb
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