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Bug#445983: marked as done (ITP: dialign-t -- Segment-based multiple sequence alignment)

Your message dated Wed, 21 Nov 2007 22:36:03 +0000
with message-id <E1IuyAt-0001Kj-Q4@ries.debian.org>
and subject line Bug#445983: fixed in dialign-t 0.2.2.dfsg-1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : dialign-t
  Version         : 0.2.2
  Upstream Author : Amarendran R. Subramanian <subraman[nospam_AT]informatik[dot]uni[dash]tuebingen[dot]de>
  URL             : http://dialign-t.gobics.de/
  License         : LGPL
  Programming Lang: C
  Description     : Segment-based multiple sequence alignment

 DIALIGN-T is a command line tool to perform multiple alignment of protein or
 DNA sequences. It is a complete reimplementation of the segment-base approach
 including several new improvements and heuristics that significantly enhance
 the quality of the output alignments compared to DIALIGN 2.2. For pairwise
 alignment, DIALIGN-T uses a fragment-chaining algorithm that favours chains of
 low-scoring local alignments over isolated high-scoring fragments. For
 multiple alignment, DIALIGN-T uses an improved greedy procedure that is less
 sensitive to spurious local sequence similarities.  DIALIGN-T has been
 published in Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann,
 Burkhard Morgenstern: DIALIGN-T: An improved algorithm for segment-based
 multiple sequence alignment. BMC Bioinformatics 2005, 6:66.


DIALIGN-T is needed by dm_coffee, a special mode of t_coffee prepared
especially for Debian, in which non-free alignment software was replaced by
free alternatives.

--- End Message ---
--- Begin Message --- 
Source: dialign-t
Source-Version: 0.2.2.dfsg-1

We believe that the bug you reported is fixed in the latest version of
dialign-t, which is due to be installed in the Debian FTP archive:

dialign-t-data_0.2.2.dfsg-1_all.deb
  to pool/main/d/dialign-t/dialign-t-data_0.2.2.dfsg-1_all.deb
dialign-t_0.2.2.dfsg-1.diff.gz
  to pool/main/d/dialign-t/dialign-t_0.2.2.dfsg-1.diff.gz
dialign-t_0.2.2.dfsg-1.dsc
  to pool/main/d/dialign-t/dialign-t_0.2.2.dfsg-1.dsc
dialign-t_0.2.2.dfsg-1_i386.deb
  to pool/main/d/dialign-t/dialign-t_0.2.2.dfsg-1_i386.deb
dialign-t_0.2.2.dfsg.orig.tar.gz
  to pool/main/d/dialign-t/dialign-t_0.2.2.dfsg.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 445983@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <charles-debian-nospam@plessy.org> (supplier of updated dialign-t package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Mon, 19 Nov 2007 23:45:20 +0900
Source: dialign-t
Binary: dialign-t-data dialign-t
Architecture: source i386 all
Version: 0.2.2.dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <charles-debian-nospam@plessy.org>
Description: 
 dialign-t  - Segment-based multiple sequence alignment
 dialign-t-data - Common data files for dialign-t
Closes: 445983
Changes: 
 dialign-t (0.2.2.dfsg-1) unstable; urgency=low
 .
   * Removed upstream documentation.
   * Initial release (Closes: #445983)
Files: 
 590f3d2a45b15106bc5fa8671b94754e 888 science optional dialign-t_0.2.2.dfsg-1.dsc
 fe3d3db71a18efb790ea7297da361212 1532124 science optional dialign-t_0.2.2.dfsg.orig.tar.gz
 e9a2d714c7f076659931948431d022f6 6527 science optional dialign-t_0.2.2.dfsg-1.diff.gz
 7aa4f0e491e765c260c2a13804e152ff 32400 science optional dialign-t_0.2.2.dfsg-1_i386.deb
 9ab454abd7a082b018cfff406b97f3a3 1475018 science optional dialign-t-data_0.2.2.dfsg-1_all.deb

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--- End Message ---
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