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Bug#201761: marked as done (RFP: mummer -- rapid alignment of large DNA and amino acid sequences)

Your message dated Fri, 11 May 2007 17:38:19 +0000
with message-id <E1HmZ4N-0006Dy-Rd@ries.debian.org>
and subject line Bug#201761: fixed in mummer 3.19-1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message --- 
Package: wnpp
Version: unavailable; reported 2003-07-17
Severity: wishlist


* Package name    : mummer
  Version         : 3.0.4
  Upstream Author : Adam Phillippy, et al <mummer@tigr.org>
* URL             : http://www.tigr.org/software/mummer/
* License         : Artistic
  Description     : rapid alignment of large DNA and amino acid sequences

 MUMmer is an open source software package for the rapid alignment of
 very large DNA and amino acid sequences. MUMmer relies on a suffice tree
 data structure for efficient pattern matching.
 .
 Suffix trees are suited for large data sets because they can be
 constructed and searched in linear time and space. This allows mummer to
 find all 20 base pair maximal exact matches between two ~5 million base
 pair bacterial genomes in 20 seconds on a typicall desktop machine.

-- System Information:
Debian Release: testing/unstable
Architecture: i386
Kernel: Linux bioinfo 2.4.21-openmosix-1 #7 SMP Sun Jul 13 21:10:15 PDT 2003 i686
Locale: LANG=C, LC_CTYPE=C

--- End Message ---
--- Begin Message --- 
Source: mummer
Source-Version: 3.19-1

We believe that the bug you reported is fixed in the latest version of
mummer, which is due to be installed in the Debian FTP archive:

mummer-doc_3.19-1_all.deb
  to pool/main/m/mummer/mummer-doc_3.19-1_all.deb
mummer_3.19-1.diff.gz
  to pool/main/m/mummer/mummer_3.19-1.diff.gz
mummer_3.19-1.dsc
  to pool/main/m/mummer/mummer_3.19-1.dsc
mummer_3.19-1_i386.deb
  to pool/main/m/mummer/mummer_3.19-1_i386.deb
mummer_3.19.orig.tar.gz
  to pool/main/m/mummer/mummer_3.19.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 201761@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated mummer package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Mon, 07 May 2007 14:11:09 +0200
Source: mummer
Binary: mummer-doc mummer
Architecture: source i386 all
Version: 3.19-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description: 
 mummer     - [Biology] Efficient sequence alignment of full genomes
 mummer-doc - [Biology] Documentation for mummer
Closes: 201761
Changes: 
 mummer (3.19-1) unstable; urgency=low
 .
   * Initial Release (Closes: Bug#201761).
     Thanks to Steffen Moeller <moeller@inb.uni-luebeck.de> who
     prepared a package for version 3.17 and just some
     cleanups were left.
   * New Standards-Version (no changes needed)
   * Switched to cdbs to simplify handling of patches
   * debian/compat: 5
Files: 
 5b6f2d57729056a89fa2cb570cc2c376 813 science optional mummer_3.19-1.dsc
 164a38ab8407acb93c7474189cc60e6e 1452837 science optional mummer_3.19.orig.tar.gz
 b465ac4d9aed23626dd49bf110a3e49f 13711 science optional mummer_3.19-1.diff.gz
 7c54612ea6fe239e42f4a038d81ae67a 1327480 doc optional mummer-doc_3.19-1_all.deb
 94f55897cfe6e4bd17a800b2fb766aa4 375798 science optional mummer_3.19-1_i386.deb

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--- End Message ---
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