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Bug#366321: ITP: amap-align -- Protein multiple alignment by sequence annealing



Hi,
* Charles Plessy <charles-debian-nospam@plessy.org> [2006-05-07 16:50]:
> Package: wnpp
> Severity: wishlist
> Owner: Charles Plessy <charles-debian-nospam@plessy.org>
> 
>   Package name    : amap-align
>   Version         : 2.0
>   Upstream Author : Ariel Schwartz <sariel@cs.berkeley.edu>
>   URL             : http://bio.math.berkeley.edu/amap/download/amap.2.0.tar.gz
>   License         : Public domain
>   Description     : Protein multiple alignment by sequence annealing
> 
>  AMAP is a command line tool to perform multiple alignment of peptidic
>  sequences. It utilizes posterior decoding, and a sequence-annealing
>  alignment, instead of the traditional progressive alignment method. It
>  is the only alignment program that allows to control the sensitivity /
>  specificity tradeoff.  It is based on the ProbCons source code, but
>  uses alignment metric accuracy and eliminates the consistency
>  transformation.
>  .
>  Homepage: http://bio.math.berkeley.edu/amap/

apt-cache show amap
Package: amap
Priority: extra
Section: net
Installed-Size: 204
Maintainer: Andrés Roldán <aroldan@debian.org>
Architecture: i386
Version: 4.8-1.1
Depends: libc6 (>= 2.3.5-1), libssl0.9.8
Suggests: nmap
Filename: pool/main/a/amap/amap_4.8-1.1_i386.deb
Size: 70512
MD5sum: a8f70d5acabd22ca17e4292849a05dbe
Description: Network protocol probing tool
 Amap allows you to probe IP ports for running protocols, ignoring the port
 number. It does this by sending probe packets to the port and analyzing the
 responses. This will allow you to find services running on non-standard
 ports.
 .
 Additionally, amapcrap is a tool that helps getting information for ports
 that don't show any output.
 .
 Having nmap installed is suggested, since amap cannot scan for open ports
 (but there is an option to import nmap's output).

Kind regards
Nico

-- 
Nico Golde - JAB: nion@jabber.ccc.de | GPG: 0x73647CFF
http://www.ngolde.de | http://www.muttng.org | http://grml.org
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gimme a keyboard with 103/104/105 keys!

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