Bug#200591: marked as done (RFP: wise2 -- DNA sequence similarity search tools, GeneWise, PromotorWise [med-bio])
Your message dated Wed, 14 Sep 2005 21:55:15 -0500 (CDT)
with message-id <20050915025515.5C93F1078A9@cerdita.damog.net>
and subject line WNPP bug closed
has caused the attached Bug report to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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From: Steffen Moeller <moeller@pzr.uni-rostock.de>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: wise2 -- [Biology] DNA sequence similarity search tools, GeneWise,
PromotorWise
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Date: Wed, 09 Jul 2003 12:03:49 +0200
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Package: wnpp
Version: unavailable; reported 2003-07-09
Severity: wishlist
* Package name : wise2
Version : 2.1.20
Upstream Author : Ewan Birney <birney@ebi.ac.uk>
* URL : http://www.ebi.ac.uk/Wise2/
* License : GPL
Description : [Biology] Sequence similarity search tools, GeneWise, PromotorWise
From the help page:
Wise2 is package that is focused on comparing DNA sequences at the level
of its conceptual translation, regardless of sequencing error and
introns. This really is a rewrite of the old wisetools package, which
was written about 3 years ago. The current version of wise2 in beta
release (2.1.17) now has all the functionality the old version had. It
can compare a single protein or a profile HMM to a genomic DNA sequence,
and predict a gene structure. This is an algorithm, called genewise,
which is one of the algorithms available in Wise2. There are other
algorithms focused on EST data rather than genomic data, as well as some
other algorithm curios. You can install it locally. The ftp site is
linked here. You can install from source code or binaries for common
unix platforms. The programs are licensed under the Gnu Public License.
Added:
Besides the above described applications, the package containts the
Dynamite code generating language for dynamic programming.
The BioPerl effort has an extension to wrap various applications
that include these wise tools.
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Received: (at 200591-done) by bugs.debian.org; 15 Sep 2005 02:55:54 +0000
>From damog@cerdita.damog.net Wed Sep 14 19:55:54 2005
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To: 200591-done@bugs.debian.org
Subject: WNPP bug closed
Message-Id: <20050915025515.5C93F1078A9@cerdita.damog.net>
Date: Wed, 14 Sep 2005 21:55:15 -0500 (CDT)
From: damog@cerdita.damog.net (David Moreno Garza)
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Hello,
This is an automatic mail sent to close the RFP you have reported or
are involved with.
Your RFP wnpp bug is being closed because of the following reasons:
- It is, as of today, older than 600 days.
- It haven't had any activity recently.
- The amount of ITPs on the Debian BTS is huge and we need to
clean up a bit the place.
As this an automatic procedure, it could of course have something
wrong and probably it would be closing some bugs that are not
intended by owners and submitters (like you) to be closed, for
example if the RFP is still of your interest, or there has been
some kind of activity around it. In that case, please reopen the
bug, do it, DO IT NOW! (I don't want to be blamed because of
mass closing and not let people know that they can easily reopen
their bugs ;-).
To re-open it, you simply have to mail control@bugs.debian.org
with a body text like this:
reopen 123456
thanks bts
Replacing '123456' for the number of your RFP bug. The subject of the
mail is ignored. Or if you have any kind of problems when dealing with
the BTS, feel free to contact me and I'd be more than happy to help
you on this: <damog@debian.org>.
This is the first mass wnpp closing that will be done. The next close
will be done on inactive RFPs older than 450 days and finally, the
ones older than 365 days (an automatic script will close *inactive*
RFPs when they reach one year old).
A similar process is being applied to the ITP wnpp bugs in these
days.
Thanks for your cooperation,
-- David Moreno Garza <damog@debian.org> Wed, 14 Sep 2005 21:54:42 -0500
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