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Bug#301673: marked as done (ITP: biofox -- bioinformatics tools as an extension on the Firefox browser [med-tools])

Your message dated Sat, 18 Jun 2005 08:39:36 -0400
with message-id <E1Djcbo-00076o-00@newraff.debian.org>
and subject line Bug#301673: fixed in mozilla-firefox-biofox 1.0.1-1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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From: "Nelson A. de Oliveira" <naoliv@biolinux.df.ibilce.unesp.br>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: RFP: biofox -- bioinformatics tools as an extension on the
 Firefox/Mozilla/Netscape browsers
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Date: Sun, 27 Mar 2005 13:53:56 -0300
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Package: wnpp
Severity: wishlist

* Package name    : biofox
  Version         : 0.3
  Upstream Author : Saleem Mohammed <saleem.m@gmail.com>
* URL             : http://schematron.unl.edu/biofox/
* License         : MPL 1.1/GPL 2.0/LGPL 2.1
  Description     : bioinformatics tools as an extension on the Firefox/Mozilla/Netscape browsers

Code bioFOX aims at implementing various bioinformatics tools as an extension on the Mozilla and Firefox browsers. Analysis of your favorite gene(s) usually require(s) retrieving it from a database like NCBI or Swiss-Prot and then performing one or more tasks including but not limited to:

    * Translation of a nucleotide sequence
    * Blast search (For eg. blastn, blastp etc.) of the desired nucleotide/protein sequence.
    * Calculation of properties (like PI, charge, molecular weight, AT/GC content etc.) of a protein/nucleotide sequence.
    * Conversion between formats (Genbank, Fasta, Swiss-Prot etc.)
    * Prediction of sequence for sub-cellular localization (PREDOTAR, TargetP, pSORT etc)

Each of these tasks requires at least the following 4 steps:

    * Visiting one of the sequence database websites,
    * searching for the gene using its name or accession ID (ACC ID),
    * copying the gene sequence
    * and importing it to other bioinformatics websites for further analysis.

Code bioFOX upon implementation would make analysis of desired sequences easier than it is today. For example, selecting a sequence and submitting it directly to a particular website of interest.

-- System Information:
Debian Release: 3.1
  APT prefers unstable
  APT policy: (990, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Kernel: Linux 2.6.11-mm1-biolinux1
Locale: LANG=pt_BR, LC_CTYPE=pt_BR (charmap=ISO-8859-1) (ignored: LC_ALL set to pt_BR)

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From: naoliv@gmail.com (Nelson A. de Oliveira)
To: 301673-close@bugs.debian.org
X-Katie: lisa $Revision: 1.30 $
Subject: Bug#301673: fixed in mozilla-firefox-biofox 1.0.1-1
Message-Id: <E1Djcbo-00076o-00@newraff.debian.org>
Sender: Joerg Jaspert <joerg@newraff.debian.org>
Date: Sat, 18 Jun 2005 08:39:36 -0400
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Source: mozilla-firefox-biofox
Source-Version: 1.0.1-1

We believe that the bug you reported is fixed in the latest version of
mozilla-firefox-biofox, which is due to be installed in the Debian FTP archive:

  to pool/main/m/mozilla-firefox-biofox/mozilla-firefox-biofox_1.0.1-1.diff.gz
  to pool/main/m/mozilla-firefox-biofox/mozilla-firefox-biofox_1.0.1-1.dsc
  to pool/main/m/mozilla-firefox-biofox/mozilla-firefox-biofox_1.0.1-1_all.deb
  to pool/main/m/mozilla-firefox-biofox/mozilla-firefox-biofox_1.0.1.orig.tar.gz

A summary of the changes between this version and the previous one is

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 301673@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
Nelson A. de Oliveira <naoliv@gmail.com> (supplier of updated mozilla-firefox-biofox package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)

Hash: SHA1

Format: 1.7
Date: Sun, 22 May 2005 00:55:03 -0300
Source: mozilla-firefox-biofox
Binary: mozilla-firefox-biofox
Architecture: source all
Version: 1.0.1-1
Distribution: unstable
Urgency: low
Maintainer: Maintainers of Mozilla Bioinformatics Extensions <pkg-mozilla-bio-maint@lists.alioth.debian.org>
Changed-By: Nelson A. de Oliveira <naoliv@gmail.com>
 mozilla-firefox-biofox - bioinformatics tools as an extension to Firefox browser
Closes: 301673
 mozilla-firefox-biofox (1.0.1-1) unstable; urgency=low
   * Initial release (Closes: #301673).
 883fab78857880e88839a5bc7c11ad0a 819 science optional mozilla-firefox-biofox_1.0.1-1.dsc
 ca81986280365c0bc9ddd4adbfa00913 128237 science optional mozilla-firefox-biofox_1.0.1.orig.tar.gz
 aef5380ccb32e02253d0a68b06ac1746 10637 science optional mozilla-firefox-biofox_1.0.1-1.diff.gz
 d461f3fc24dba38c2399b79d03e5d4be 138844 science optional mozilla-firefox-biofox_1.0.1-1_all.deb

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