Bug#286167: ITP: cluster3 -- [Biology] Reimplementation of the Eisen-clustering sofware
Package: wnpp
Severity: wishlist
* Package name : cluster3
Version : 1.27
Upstream Author : M. J. L. de Hoon <mdehoon@ims.u-tokyo.ac.jp>, S. Imoto, J. Nolan, and S. Miyano
* URL : http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/
* License : non-free
Description : [Biology] Reimplementation of the Eisen-clustering
software
The clustering software by Michael Eisen is well known and accepted in
the Bioinfromatics community. This package represents a reimplementation
and extension of the Windows program.
.
This software implements clustering routines that can be used to analyze
gene expression data. Routines for hierarchical (pairwise simple,
complete, average, and centroid linkage) clustering, k-means and
k-medians clustering, and 2D self-organizing maps are included. The
routines are available in the form of a C clustering library, an
extension module to Python, a module to Perl, as well as an enhanced
version of Cluster, which was originally developed by Michael Eisen
of Berkeley Lab. The C clustering library and the associated extension
module for Python was released under the Python license. The Perl module
was released under the Artistic License. Cluster 3.0 is covered by the
original Cluster/TreeView license.
.
This package contains the command line and motif gui versions
of Cluster 3.0.
.
Homepage: http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/
An inital effort to provide a package is available from
http://bioinformatics.pzr.uni-rostock.de/~moeller/debian/cluster3
-- System Information:
Debian Release: 3.1
APT prefers testing
APT policy: (500, 'testing')
Architecture: i386 (i686)
Kernel: Linux 2.6.9
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