Bug#118355: marked as done (ITP: molphy -- [Biology] Program Package for Molecular Phylogenetics)
Your message dated Mon, 07 Jan 2002 15:06:44 -0500
with message-id <E16Ng2e-00027v-00@auric.debian.org>
and subject line Bug#118355: fixed in molphy 2.3b3-1
has caused the attached Bug report to be marked as done.
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Received: (at submit) by bugs.debian.org; 5 Nov 2001 13:39:48 +0000
>From TilleA@rki.de Mon Nov 05 07:39:48 2001
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From: "Tille, Andreas" <TilleA@rki.de>
To: submit@bugs.debian.org
Subject: wnpp: [ITP] molphy - [Biology] Program Package for Molecular Phylogenetics
X-Mailer: bug 3.3.10
Message-Id: <E160jxe-0001gC-00@wr-linux02>
Date: Mon, 05 Nov 2001 14:38:46 +0100
Delivered-To: submit@bugs.debian.org
Package: wnpp
Version: N/A
Severity: wishlist
I need this program for the package Arb I want to package (no ITP yet
for thi because I have no license statement)
URL: http://www.ism.ac.jp/software/ismlib/softother.e.html
>From the molphy-README ("License" marked with *** *** by me):
This is the MOLPHY (ProtML) distribution, version 2.3.
Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa.
All rights reserved.
MOLPHY is a program package for MOLecular PHYlogenetics.
ProtML is a main program in MOLPHY for inferring evolutionary trees from
PROTein (amino acid) sequences by using the Maximum Likelihood method.
*** MOLPHY is a free software, and you can use and redistribute it. ***
The programs are written in a standard subset of C with UNIX-like OS.
The utilities are written in the "Perl" (Ver.4.036) with UNIX-like OS.
MOLPHY has been tested on SUN4's (cc & gcc with SUN-OS 4.1.3) and
HP9000/700 (cc, c89 & gcc with HP-UX 9.05).
However, MOLPHY has NOT been tested on VAX, IBM-PC, and Macintosh.
NETWORK DISTRIBUTION ONLY: The latest version of MOLPHY is always available
by anonymous ftp in sunmh.ism.ac.jp(133.58.12.20): /pub/molphy*
or in ftp.ism.ac.jp: /pub/ISMLIB/MOLPHY/.
-- System Information
Debian Release: testing/unstable
Kernel Version: Linux wr-linux02 2.4.9 #1 Die Sep 18 11:27:02 CEST 2001 i686 unknown
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>From troup@auric.debian.org Mon Jan 07 14:08:36 2002
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From: Andreas Tille <tille@debian.org>
To: 118355-close@bugs.debian.org
X-Katie: $Revision: 1.66 $
Subject: Bug#118355: fixed in molphy 2.3b3-1
Message-Id: <E16Ng2e-00027v-00@auric.debian.org>
Sender: James Troup <troup@auric.debian.org>
Date: Mon, 07 Jan 2002 15:06:44 -0500
Delivered-To: 118355-close@bugs.debian.org
We believe that the bug you reported is fixed in the latest version of
molphy, which has been installed in the Debian FTP archive:
molphy_2.3b3-1.diff.gz
to pool/non-free/m/molphy/molphy_2.3b3-1.diff.gz
molphy_2.3b3-1.dsc
to pool/non-free/m/molphy/molphy_2.3b3-1.dsc
molphy_2.3b3-1_i386.deb
to pool/non-free/m/molphy/molphy_2.3b3-1_i386.deb
molphy_2.3b3.orig.tar.gz
to pool/non-free/m/molphy/molphy_2.3b3.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 118355@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated molphy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Mon, 12 Nov 2001 10:56:06 +0100
Source: molphy
Binary: molphy
Architecture: source i386
Version: 2.3b3-1
Distribution: unstable
Urgency: low
Maintainer: Andreas Tille <tille@debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
molphy - [Biology] Program Package for MOLecular PHYlogenetics
Closes: 118355
Changes:
molphy (2.3b3-1) unstable; urgency=low
.
* Initial Release.
closes: #118355
* Rebuild source tarball because it was not gzipped. Used symlinks
instead of copies from some source files.
* Applied Arb patches.
* Wrote manpages
* Added documentation of older version because MolPhy comes without
any documentation
* Added examples and makefile to test them.
Files:
48201b38df3842a654f19e9cbbd7a719 608 non-free/science optional molphy_2.3b3-1.dsc
e8ba6bc5250f7d59b7ff9f95300898d9 111069 non-free/science optional molphy_2.3b3.orig.tar.gz
6a961bfc3bbe48f54c87d743b76284e3 40991 non-free/science optional molphy_2.3b3-1.diff.gz
fb5e8098a2452a08c97effbd06c5bddb 216864 non-free/science optional molphy_2.3b3-1_i386.deb
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