Autodock/Linux/Makefile

To: debian-user@lists.debian.org
Subject: Autodock/Linux/Makefile
From: "Y.Gu" <gu_yjun@yahoo.com>
Date: Thu, 22 Apr 2004 21:54:28 -0700 (PDT)
Message-id: <[🔎] 20040423045428.90455.qmail@web40414.mail.yahoo.com>
Dear All,
I am trying to compile the Autodock3 on RedHat9
Linux/Intel. I have the compiling error as following,
could anyone advise what's happening here?

Best wishes

Yijun
...

gs.cc: In constructor
`Genetic_Algorithm::Genetic_Algorithm(EvalMode,
   Selection_Mode, Xover_Mode, Worst_Mode, int, float,
float, int, unsigned
   int, unsigned int)':
gs.cc:170: warning: initialization to `int' from
`double'
gs.cc:170: warning: argument to `int' from `double'
gs.cc:170: warning: initialization to `int' from
`double'
gs.cc:170: warning: argument to `int' from `double'
gcc  -DNDEBUG     -O3    -c initautodock.cc

...gcc  -DNDEBUG     -O3    -c trilinterp.cc
ar r  libad.a analysis.o banner.o bestpdb.o
call_glss.o call_gs.o call_ls.o changeState.o
check_header_float.o check_header_int.o
check_header_line.o cluster_analysis.o clmode.o
cmdmode.o cnv_state_to_coords.o com.o stateLibrary.o
readfield.o readmap.o readPDBQ.o dpftypes.o eval.o
evaluate_energy.o gencau.o getrms.o get_atom_type.o
getInitialState.o getpdbcrds.o gs.o initautodock.o
input_state.o investigate.o linpack.o ls.o mapping.o
minmeanmax.o mkNewState.o mkTorTree.o mkRandomState.o
nonbonds.o openfile.o output_state.o parse_com_line.o
parse_dpf_line.o parse_pdbq_line.o parse_trj_line.o
print_2x.o print_atomic_energies.o print_avsfld.o
writeMolAsPDBQ.o writePDBQ.o writePDBQState.o
print_rem.o printdate.o printEnergies.o printhms.o
prClusterHist.o prInitialState.o prTorConList.o
qmultiply.o qtransform.o quicksort.o ranlib.o rep.o
scauchy.o set_cmd_io_std.o setflags.o simanneal.o
sort_enrg.o stop.o strindex.o success.o
summarizegrids.o support.o swap.o timesys.o
timesyshms.o torNorVec.o torsion.o usage.o weedbonds.o
warn_bad_file.o eintcal.o eintcalPrint.o intnbtable.o
nbe.o trilinterp.o
ranlib   libad.a
echo . '  on  '`date`', using '`hostname` >>
LATEST_MAKE
echo 'Flags: 'gcc    -DNOSQRT -L. -lad -lm  >>
LATEST_MAKE
gcc    -DNOSQRT -o autodock3 main.o -L. -lad -lm
main.o(.text+0x3e95): In function `main':
: undefined reference to `operator new(unsigned)'
main.o(.text+0x3f67): In function `main':
: undefined reference to `operator new(unsigned)'
main.o(.text+0x3fc6): In function `main':
: undefined reference to `operator new[](unsigned)'
main.o(.text+0x3fd7): In function `main':
: undefined reference to `operator new[](unsigned)'
main.o(.text+0x404a): In function `main':
: undefined reference to `operator new[](unsigned)'
main.o(.text+0x4065): In function `main':
: undefined reference to `operator new[](unsigned)'
main.o(.text+0x4131): In function `main':
: undefined reference to `operator new(unsigned)'
main.o(.text+0x4188): In function `main':
: undefined reference to `operator new[](unsigned)'
main.o(.text+0x4199): In function `main':
: undefined reference to `operator new[](unsigned)'
main.o(.text+0x41c3): In function `main':
: undefined reference to `operator new[](unsigned)'
main.o(.text+0x5761): In function `main':
: undefined reference to `operator delete(void*)'
main.o(.gnu.linkonce.t._ZN15Solis_Wets_BaseD2Ev+0x2d):
In function `Solis_Wets_Base::~Solis_Wets_Base
[not-in-charge]()':
: undefined reference to `operator delete[](void*)'
main.o(.gnu.linkonce.t._ZN15Solis_Wets_BaseD2Ev+0x3d):
In function `Solis_Wets_Base::~Solis_Wets_Base
[not-in-charge]()':
: undefined reference to `operator delete[](void*)'
main.o(.gnu.linkonce.t._ZN11Solis_Wets1D0Ev+0x21): In
function `Solis_Wets1::~Solis_Wets1 [in-charge
deleting]()':
: undefined reference to `operator delete(void*)'
main.o(.gnu.linkonce.t._ZN18Pseudo_Solis_Wets1D0Ev+0x21):
In function `Pseudo_Solis_Wets1::~Pseudo_Solis_Wets1
[in-charge deleting]()':
: undefined reference to `operator delete(void*)'
main.o(.gnu.linkonce.d._ZTI11Solis_Wets1+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
main.o(.gnu.linkonce.d._ZTI18Pseudo_Solis_Wets1+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
main.o(.gnu.linkonce.d._ZTV12Local_Search+0x10):
undefined reference to `__cxa_pure_virtual'
main.o(.gnu.linkonce.d._ZTV12Local_Search+0x14):
undefined reference to `__cxa_pure_virtual'
main.o(.gnu.linkonce.d._ZTV12Local_Search+0x18):
undefined reference to `__cxa_pure_virtual'
main.o(.gnu.linkonce.t._ZN12Local_SearchD0Ev+0x11): In
function `Local_Search::~Local_Search [in-charge
deleting]()':
: undefined reference to `operator delete(void*)'
main.o(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD2Ev+0x39):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[not-in-charge]()':
: undefined reference to `operator delete[](void*)'
main.o(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD2Ev+0x49):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[not-in-charge]()':
: undefined reference to `operator delete[](void*)'
main.o(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD2Ev+0x59):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[not-in-charge]()':
: undefined reference to `operator delete[](void*)'
main.o(.gnu.linkonce.d._ZTI12Local_Search+0x0):
undefined reference to `vtable for
__cxxabiv1::__class_type_info'
main.o(.eh_frame+0x12): undefined reference to
`__gxx_personality_v0'
./libad.a(analysis.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(call_glss.o)(.text+0x54): In function
`generate_R(int, double, double, double, double,
double, double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_glss.o)(.text+0x63): In function
`generate_R(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x86): In function
`generate_R(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0xae): In function
`generate_R(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0xd6): In function
`generate_R(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0xf4): In function
`generate_R(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x125): In function
`generate_R(int, double, double, double, double,
double, double)':
: undefined reference to `operator delete(void*)'
./libad.a(call_glss.o)(.text+0x17c): In function
`generate_Gtype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_glss.o)(.text+0x18b): In function
`generate_Gtype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x1ae): In function
`generate_Gtype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x1d6): In function
`generate_Gtype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x1fe): In function
`generate_Gtype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x21c): In function
`generate_Gtype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x261): In function
`generate_Gtype(int, double, double, double, double,
double, double)':
: undefined reference to `operator delete(void*)'
./libad.a(call_glss.o)(.text+0x2b8): In function
`generate_Ptype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_glss.o)(.text+0x2c7): In function
`generate_Ptype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x2ea): In function
`generate_Ptype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x312): In function
`generate_Ptype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x33a): In function
`generate_Ptype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x358): In function
`generate_Ptype(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x39d): In function
`generate_Ptype(int, double, double, double, double,
double, double)':
: undefined reference to `operator delete(void*)'
./libad.a(call_glss.o)(.text+0x451): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_glss.o)(.text+0x463): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x489): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x4c0): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x4f7): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x518): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x56b): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_glss.o)(.text+0x57d): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x5a3): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x5da): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x611): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x632): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_glss.o)(.text+0x6c5): In function
`random_ind(int, double, double, double, double,
double, double)':
: undefined reference to `operator delete(void*)'
./libad.a(call_glss.o)(.text+0x7b7): In function
`call_glss(Global_Search*, Local_Search*, state,
unsigned, unsigned, float, float, float, float, float,
float, int, unsigned, molecule*, char)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_glss.o)(.text+0x9f1): In function
`call_glss(Global_Search*, Local_Search*, state,
unsigned, unsigned, float, float, float, float, float,
float, int, unsigned, molecule*, char)':
: undefined reference to `operator delete[](void*)'
./libad.a(call_glss.o)(.text+0xc87): In function
`call_glss(Global_Search*, Local_Search*, state,
unsigned, unsigned, float, float, float, float, float,
float, int, unsigned, molecule*, char)':
: undefined reference to `operator delete[](void*)'
./libad.a(call_glss.o)(.eh_frame+0x12): undefined
reference to `__gxx_personality_v0'
./libad.a(call_gs.o)(.text+0x3f): In function
`call_gs(Global_Search*, state, unsigned, unsigned,
float, float, float, float, float, float, molecule*)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_gs.o)(.text+0x165): In function
`call_gs(Global_Search*, state, unsigned, unsigned,
float, float, float, float, float, float, molecule*)':
: undefined reference to `operator delete[](void*)'
./libad.a(call_gs.o)(.text+0x29b): In function
`call_gs(Global_Search*, state, unsigned, unsigned,
float, float, float, float, float, float, molecule*)':
: undefined reference to `operator delete[](void*)'
./libad.a(call_gs.o)(.eh_frame+0x12): undefined
reference to `__gxx_personality_v0'
./libad.a(call_ls.o)(.text+0xf): In function
`cnv_state_to_rep(state const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_ls.o)(.text+0x1d): In function
`cnv_state_to_rep(state const&)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_ls.o)(.text+0x48): In function
`cnv_state_to_rep(state const&)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_ls.o)(.text+0x76): In function
`cnv_state_to_rep(state const&)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_ls.o)(.text+0xa4): In function
`cnv_state_to_rep(state const&)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_ls.o)(.text+0xfb): In function
`cnv_state_to_rep(state const&)':
: undefined reference to `operator new(unsigned)'
./libad.a(call_ls.o)(.text+0x175): In function
`cnv_state_to_rep(state const&)':
: undefined reference to `operator delete(void*)'
./libad.a(call_ls.o)(.text+0x30f): In function
`call_ls(Local_Search*, state, unsigned, molecule*)':
: undefined reference to `operator new[](unsigned)'
./libad.a(call_ls.o)(.text+0x3ff): In function
`call_ls(Local_Search*, state, unsigned, molecule*)':
: undefined reference to `operator delete[](void*)'
./libad.a(call_ls.o)(.text+0x51f): In function
`call_ls(Local_Search*, state, unsigned, molecule*)':
: undefined reference to `operator delete[](void*)'
./libad.a(call_ls.o)(.eh_frame+0x12): undefined
reference to `__gxx_personality_v0'
./libad.a(cluster_analysis.o)(.eh_frame+0x11):
undefined reference to `__gxx_personality_v0'
./libad.a(clmode.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(cmdmode.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(cnv_state_to_coords.o)(.eh_frame+0x11):
undefined reference to `__gxx_personality_v0'
./libad.a(com.o)(.eh_frame+0x11): more undefined
references to `__gxx_personality_v0' follow
./libad.a(gs.o)(.text+0x1e2): In function
`Genetic_Algorithm::Genetic_Algorithm[not-in-charge](EvalMode,
Selection_Mode, Xover_Mode, Worst_Mode, int, float,
float, int, unsigned, unsigned)':
: undefined reference to `operator new[](unsigned)'
./libad.a(gs.o)(.text+0x2c6): In function
`Genetic_Algorithm::Genetic_Algorithm[in-charge](EvalMode,
Selection_Mode, Xover_Mode, Worst_Mode, int, float,
float, int, unsigned, unsigned)':
: undefined reference to `operator new[](unsigned)'
./libad.a(gs.o)(.text+0x4a3): In function
`Genetic_Algorithm::make_table(int, float)':
: undefined reference to `operator new[](unsigned)'
./libad.a(gs.o)(.text+0x6ea): In function
`Genetic_Algorithm::initialize(unsigned, unsigned)':
: undefined reference to `operator new[](unsigned)'
./libad.a(gs.o)(.text+0x6f5): In function
`Genetic_Algorithm::initialize(unsigned, unsigned)':
: undefined reference to `operator new[](unsigned)'
./libad.a(gs.o)(.text+0x73e): In function
`Genetic_Algorithm::initialize(unsigned, unsigned)':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.text+0x74c): In function
`Genetic_Algorithm::initialize(unsigned, unsigned)':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.text+0x75a): In function
`Genetic_Algorithm::initialize(unsigned, unsigned)':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.text+0x1515): In function
`Genetic_Algorithm::selection(Population&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(gs.o)(.text+0x180b): In function
`Genetic_Algorithm::search(Population&)':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.text+0x19c3): In function
`Genetic_Algorithm::search(Population&)':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.gnu.linkonce.t._ZN17Genetic_AlgorithmD1Ev+0x3d):
In function `Genetic_Algorithm::~Genetic_Algorithm
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.gnu.linkonce.t._ZN17Genetic_AlgorithmD1Ev+0x4d):
In function `Genetic_Algorithm::~Genetic_Algorithm
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.gnu.linkonce.t._ZN17Genetic_AlgorithmD1Ev+0x5d):
In function `Genetic_Algorithm::~Genetic_Algorithm
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(gs.o)(.gnu.linkonce.t._ZN17Genetic_AlgorithmD1Ev+0x6d):
more undefined references to `operator
delete[](void*)' follow
./libad.a(gs.o)(.gnu.linkonce.t._ZN17Genetic_AlgorithmD0Ev+0x38):
In function `Genetic_Algorithm::~Genetic_Algorithm
[in-charge deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(gs.o)(.gnu.linkonce.d._ZTI17Genetic_Algorithm+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(gs.o)(.gnu.linkonce.d._ZTV13Global_Search+0x10):
undefined reference to `__cxa_pure_virtual'
./libad.a(gs.o)(.gnu.linkonce.d._ZTV13Global_Search+0x14):
undefined reference to `__cxa_pure_virtual'
./libad.a(gs.o)(.gnu.linkonce.d._ZTV13Global_Search+0x18):
undefined reference to `__cxa_pure_virtual'
./libad.a(gs.o)(.gnu.linkonce.d._ZTV13Global_Search+0x1c):
undefined reference to `__cxa_pure_virtual'
./libad.a(gs.o)(.gnu.linkonce.t._ZN13Global_SearchD0Ev+0x11):
In function `Global_Search::~Global_Search [in-charge
deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(gs.o)(.gnu.linkonce.d._ZTI13Global_Search+0x0):
undefined reference to `vtable for
__cxxabiv1::__class_type_info'
./libad.a(gs.o)(.eh_frame+0x12): undefined reference
to `__gxx_personality_v0'
./libad.a(input_state.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(investigate.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(ls.o)(.gnu.linkonce.d._ZTV17Pseudo_Solis_Wets+0x1c):
undefined reference to `__cxa_pure_virtual'
./libad.a(ls.o)(.gnu.linkonce.d._ZTV10Solis_Wets+0x1c):
undefined reference to `__cxa_pure_virtual'
./libad.a(ls.o)(.gnu.linkonce.d._ZTV15Solis_Wets_Base+0x1c):
undefined reference to `__cxa_pure_virtual'
./libad.a(ls.o)(.gnu.linkonce.d._ZTV15Solis_Wets_Base+0x20):
undefined reference to `__cxa_pure_virtual'
./libad.a(ls.o)(.gnu.linkonce.t._ZN15Solis_Wets_BaseD1Ev+0x2d):
In function `Solis_Wets_Base::~Solis_Wets_Base
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN15Solis_Wets_BaseD1Ev+0x3d):
In function `Solis_Wets_Base::~Solis_Wets_Base
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN15Solis_Wets_BaseD0Ev+0x35):
In function `Solis_Wets_Base::~Solis_Wets_Base
[in-charge deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN15Solis_Wets_BaseD0Ev+0x45):
In function `Solis_Wets_Base::~Solis_Wets_Base
[in-charge deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN15Solis_Wets_BaseD0Ev+0x2a):
In function `Solis_Wets_Base::~Solis_Wets_Base
[in-charge deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN10Solis_WetsD0Ev+0x21):
In function `Solis_Wets::~Solis_Wets [in-charge
deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD1Ev+0x39):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD1Ev+0x49):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD1Ev+0x59):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD0Ev+0x41):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[in-charge deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD0Ev+0x51):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[in-charge deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(ls.o)(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD0Ev+0x61):
more undefined references to `operator
delete[](void*)' follow
./libad.a(ls.o)(.gnu.linkonce.t._ZN17Pseudo_Solis_WetsD0Ev+0x37):
In function `Pseudo_Solis_Wets::~Pseudo_Solis_Wets
[in-charge deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(ls.o)(.gnu.linkonce.d._ZTI15Solis_Wets_Base+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(ls.o)(.gnu.linkonce.d._ZTI10Solis_Wets+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(ls.o)(.gnu.linkonce.d._ZTI17Pseudo_Solis_Wets+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(ls.o)(.eh_frame+0x12): undefined reference
to `__gxx_personality_v0'
./libad.a(mapping.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(minmeanmax.o)(.text+0x29): In function
`minmeanmax(_IO_FILE*, Population&, int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(minmeanmax.o)(.text+0x34): In function
`minmeanmax(_IO_FILE*, Population&, int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(minmeanmax.o)(.text+0x41): In function
`minmeanmax(_IO_FILE*, Population&, int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(minmeanmax.o)(.text+0x4c): In function
`minmeanmax(_IO_FILE*, Population&, int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(minmeanmax.o)(.text+0x1ed): In function
`minmeanmax(_IO_FILE*, Population&, int)':
: undefined reference to `operator delete[](void*)'
./libad.a(minmeanmax.o)(.text+0x202): In function
`minmeanmax(_IO_FILE*, Population&, int)':
: undefined reference to `operator delete[](void*)'
./libad.a(minmeanmax.o)(.text+0x217): In function
`minmeanmax(_IO_FILE*, Population&, int)':
: undefined reference to `operator delete[](void*)'
./libad.a(minmeanmax.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(mkTorTree.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(openfile.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(parse_pdbq_line.o)(.eh_frame+0x11):
undefined reference to `__gxx_personality_v0'
./libad.a(parse_trj_line.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(writePDBQState.o)(.eh_frame+0x11): more
undefined references to `__gxx_personality_v0' follow
./libad.a(rep.o)(.text+0x28): In function
`IntVector::IntVector[not-in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x9c): In function
`IntVector::IntVector[in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x110): In function
`IntVector::IntVector[not-in-charge](int, long,
long)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x180): In function
`IntVector::IntVector[in-charge](int, long, long)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x21d): In function
`IntVector::IntVector[not-in-charge](IntVector
const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x28d): more undefined
references to `operator new[](unsigned)' follow
./libad.a(rep.o)(.text+0x4ab): In function
`IntVector::operator=(Representation const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.text+0x4ea): In function
`RealVector::RealVector[not-in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x562): In function
`RealVector::RealVector[in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x5e4): In function
`RealVector::RealVector[not-in-charge](int, double,
double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x66c): In function
`RealVector::RealVector[in-charge](int, double,
double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x725): In function
`RealVector::RealVector[not-in-charge](RealVector
const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x7b1): more undefined
references to `operator new[](unsigned)' follow
./libad.a(rep.o)(.text+0x9d7): In function
`RealVector::operator=(Representation const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.text+0xa0c): In function
`ConstrainedRealVector::ConstrainedRealVector[not-in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0xa80): In function
`ConstrainedRealVector::ConstrainedRealVector[in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0xb00): In function
`ConstrainedRealVector::ConstrainedRealVector[not-in-charge](int,
double, double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0xb84): In function
`ConstrainedRealVector::ConstrainedRealVector[in-charge](int,
double, double)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0xc3d): In function
`ConstrainedRealVector::ConstrainedRealVector[not-in-charge](ConstrainedRealVector
const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0xcc5): more undefined
references to `operator new[](unsigned)' follow
./libad.a(rep.o)(.text+0xf9f): In function
`ConstrainedRealVector::operator=(Representation
const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.text+0xfc9): In function
`BitVector::BitVector[not-in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x102d): In function
`BitVector::BitVector[in-charge](int)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x1091): In function
`BitVector::BitVector[not-in-charge](int, float)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x10f1): In function
`BitVector::BitVector[in-charge](int, float)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x1182): In function
`BitVector::BitVector[not-in-charge](BitVector
const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(rep.o)(.text+0x11f2): more undefined
references to `operator new[](unsigned)' follow
./libad.a(rep.o)(.text+0x1387): In function
`BitVector::operator=(Representation const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN9IntVectorD1Ev+0x25):
In function `IntVector::~IntVector [in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN9IntVectorD0Ev+0x2d):
In function `IntVector::~IntVector [in-charge
deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN9IntVectorD0Ev+0x23):
In function `IntVector::~IntVector [in-charge
deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK9IntVector5cloneEv+0xb):
In function `IntVector::clone() const':
: undefined reference to `operator new(unsigned)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK9IntVector5cloneEv+0x35):
In function `IntVector::clone() const':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN10RealVectorD1Ev+0x25):
In function `RealVector::~RealVector [in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN10RealVectorD0Ev+0x2d):
In function `RealVector::~RealVector [in-charge
deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN10RealVectorD0Ev+0x23):
In function `RealVector::~RealVector [in-charge
deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK10RealVector5cloneEv+0xb):
In function `RealVector::clone() const':
: undefined reference to `operator new(unsigned)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK10RealVector5cloneEv+0x35):
In function `RealVector::clone() const':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN21ConstrainedRealVectorD1Ev+0x25):
In function
`ConstrainedRealVector::~ConstrainedRealVector
[in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN21ConstrainedRealVectorD0Ev+0x2d):
In function
`ConstrainedRealVector::~ConstrainedRealVector
[in-charge deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN21ConstrainedRealVectorD0Ev+0x23):
In function
`ConstrainedRealVector::~ConstrainedRealVector
[in-charge deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK21ConstrainedRealVector5cloneEv+0xb):
In function `ConstrainedRealVector::clone() const':
: undefined reference to `operator new(unsigned)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK21ConstrainedRealVector5cloneEv+0x35):
In function `ConstrainedRealVector::clone() const':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN9BitVectorD1Ev+0x25):
In function `BitVector::~BitVector [in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN9BitVectorD0Ev+0x2d):
In function `BitVector::~BitVector [in-charge
deleting]()':
: undefined reference to `operator delete[](void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZN9BitVectorD0Ev+0x23):
In function `BitVector::~BitVector [in-charge
deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK9BitVector5cloneEv+0xb):
In function `BitVector::clone() const':
: undefined reference to `operator new(unsigned)'
./libad.a(rep.o)(.gnu.linkonce.t._ZNK9BitVector5cloneEv+0x35):
In function `BitVector::clone() const':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.d._ZTI9IntVector+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(rep.o)(.gnu.linkonce.d._ZTI10RealVector+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(rep.o)(.gnu.linkonce.d._ZTI21ConstrainedRealVector+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(rep.o)(.gnu.linkonce.d._ZTI9BitVector+0x0):
undefined reference to `vtable for
__cxxabiv1::__si_class_type_info'
./libad.a(rep.o)(.gnu.linkonce.d._ZTV14Representation+0x10):
undefined reference to `__cxa_pure_virtual'
./libad.a(rep.o)(.gnu.linkonce.d._ZTV14Representation+0x18):
undefined reference to `__cxa_pure_virtual'
./libad.a(rep.o)(.gnu.linkonce.d._ZTV14Representation+0x1c):
undefined reference to `__cxa_pure_virtual'
./libad.a(rep.o)(.gnu.linkonce.d._ZTV14Representation+0x20):
undefined reference to `__cxa_pure_virtual'
./libad.a(rep.o)(.gnu.linkonce.d._ZTV14Representation+0x24):
undefined reference to `__cxa_pure_virtual'
./libad.a(rep.o)(.gnu.linkonce.d._ZTV14Representation+0x28):
more undefined references to `__cxa_pure_virtual'
follow
./libad.a(rep.o)(.gnu.linkonce.t._ZN14RepresentationD0Ev+0x11):
In function `Representation::~Representation
[in-charge deleting]()':
: undefined reference to `operator delete(void*)'
./libad.a(rep.o)(.gnu.linkonce.d._ZTI14Representation+0x0):
undefined reference to `vtable for
__cxxabiv1::__class_type_info'
./libad.a(rep.o)(.eh_frame+0x12): undefined reference
to `__gxx_personality_v0'
./libad.a(setflags.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(simanneal.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(sort_enrg.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(stop.o)(.eh_frame+0x11): undefined reference
to `__gxx_personality_v0'
./libad.a(success.o)(.eh_frame+0x11): more undefined
references to `__gxx_personality_v0' follow
./libad.a(support.o)(.text+0x30): In function
`Population::Population[not-in-charge](Population&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0x14c): In function
`Population::Population[in-charge](Population&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0x78a): In function
`Genotype::Genotype[not-in-charge](unsigned,
Representation**)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0x82e): In function
`Genotype::Genotype[in-charge](unsigned,
Representation**)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0x924): In function
`Genotype::Genotype[not-in-charge](Genotype&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0x934): more undefined
references to `operator new[](unsigned)' follow
./libad.a(support.o)(.text+0xa41): In function
`Genotype::~Genotype [not-in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0xaa9): In function
`Genotype::~Genotype [in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0xb8c): In function
`Genotype::operator=(Genotype const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0xb9c): In function
`Genotype::operator=(Genotype const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0xbad): In function
`Genotype::operator=(Genotype const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0xbbe): In function
`Genotype::operator=(Genotype const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0xd85): In function
`Phenotype::Phenotype[not-in-charge](unsigned,
Representation**)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0xe35): In function
`Phenotype::Phenotype[in-charge](unsigned,
Representation**)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0xf33): In function
`Phenotype::Phenotype[not-in-charge](Phenotype
const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0xf44): In function
`Phenotype::Phenotype[not-in-charge](Phenotype
const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0xff7): In function
`Phenotype::Phenotype[in-charge](Phenotype const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0x1008): more undefined
references to `operator new[](unsigned)' follow
./libad.a(support.o)(.text+0x1111): In function
`Phenotype::operator=(Phenotype const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0x1122): In function
`Phenotype::operator=(Phenotype const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0x1191): In function
`Phenotype::~Phenotype [not-in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0x11f9): In function
`Phenotype::~Phenotype [in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0x1589): In function
`Population::operator=(Population const&)':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0x15b1): In function
`Population::operator=(Population const&)':
: undefined reference to `operator new[](unsigned)'
./libad.a(support.o)(.text+0xa38): In function
`Genotype::~Genotype [not-in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0xaa0): In function
`Genotype::~Genotype [in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0x1188): In function
`Phenotype::~Phenotype [not-in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.text+0x11f0): In function
`Phenotype::~Phenotype [in-charge]()':
: undefined reference to `operator delete[](void*)'
./libad.a(support.o)(.eh_frame+0x12): undefined
reference to `__gxx_personality_v0'
./libad.a(torNorVec.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(weedbonds.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(warn_bad_file.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(intnbtable.o)(.eh_frame+0x11): undefined
reference to `__gxx_personality_v0'
./libad.a(bestpdb.o)(.eh_frame+0x11): more undefined
references to `__gxx_personality_v0' follow
collect2: ld returned 1 exit status
make: *** [autodock3] Error 1








=====
Kindness makes a fellow feel good whether it's being done TO him or BY him



	
		
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