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Bug#742276: marked as done (pdfannotextractor & pax do not work at all)

Your message dated Sun, 24 Jul 2022 00:10:16 +0200
with message-id <7a177f22-38e3-ec15-8832-c5192d268b88@web.de>
and subject line Re: Bug#670040: pax do not work at all
has caused the Debian Bug report #670040,
regarding pdfannotextractor & pax do not work at all
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
670040: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=670040
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: texlive-latex-extra
Version: 2013.20140314-1
Severity: normal
File: /usr/bin/pdfannotextractor

pdfannotextractor does not complete successfully with any pdf file, and
always gives the following output:

$ pdfannotextractor /usr/share/doc/tig/manual.pdf --debug
PDFAnnotExtractor 0.1l, 2012/04/18 - Copyright (c) 2008, 2011, 2012 by Heiko Oberdiek.
* CLASSPATH: []
* is_win: [0]
* Which kpsewhich: [/usr/bin/kpsewhich]
* Backticks: [kpsewhich --progname pdfannotextractor --format texmfscripts pax.jar]
* Exit code: [0/success]
* pax.jar: [/usr/share/texlive/texmf-dist/scripts/pax/pax.jar]
* pdfbox.jar: [/usr/share/java/pdfbox.jar]
* Which java: [/usr/bin/java]
* System: [java -cp /usr/share/texlive/texmf-dist/scripts/pax/pax.jar:/usr/share/java/pdfbox.jar pax.PDFAnnotExtractor /usr/share/doc/tig/manual.pdf]
Exception in thread "main" java.lang.NoClassDefFoundError: org/pdfbox/cos/ICOSVisitor
        at java.lang.Class.getDeclaredMethods0(Native Method)
        at java.lang.Class.privateGetDeclaredMethods(Class.java:2531)
        at java.lang.Class.getMethod0(Class.java:2774)
        at java.lang.Class.getMethod(Class.java:1663)
        at sun.launcher.LauncherHelper.getMainMethod(LauncherHelper.java:494)
        at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:486)
Caused by: java.lang.ClassNotFoundException: org.pdfbox.cos.ICOSVisitor
        at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
        at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
        ... 6 more
* Exit code: [1]

in case it matters (as the "Which java" line does not tell), java is
really /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/java, from
openjdk-7-jre-headless 7u51-2.4.5-2, and libpdfbox-java 1:1.8.4+dfsg-1
was installed as described in bug #611298.

-- Package-specific info:

######################################
 List of ls-R files

-rw-r--r-- 1 root root 1537 Mar 15 15:05 /var/lib/texmf/ls-R
-rw-rw-r-- 1 root staff 80 Jul  6  2012 /usr/local/share/texmf/ls-R
lrwxrwxrwx 1 root root 29 Jun 15  2013 /usr/share/texmf/ls-R -> /var/lib/texmf/ls-R-TEXMFMAIN
lrwxrwxrwx 1 root root 31 Mar 14 05:52 /usr/share/texlive/texmf-dist/ls-R -> /var/lib/texmf/ls-R-TEXLIVEDIST
lrwxrwxrwx 1 root root 31 Mar 14 05:52 /usr/share/texlive/texmf-dist/ls-R -> /var/lib/texmf/ls-R-TEXLIVEDIST
######################################
 Config files
-rw-r--r-- 1 root root 838 Jun 16  2013 /etc/texmf/web2c/texmf.cnf
-rw-r--r-- 1 root root 6446 Mar 15 15:05 /var/lib/texmf/web2c/fmtutil.cnf
lrwxrwxrwx 1 root root 32 Mar 14 05:52 /usr/share/texmf/web2c/updmap.cfg -> /var/lib/texmf/updmap.cfg-DEBIAN
-rw-r--r-- 1 root root 9208 Mar 15 15:05 /var/lib/texmf/tex/generic/config/language.dat
######################################
 Files in /etc/texmf/web2c/
total 8
-rw-r--r-- 1 root root 283 Mar 25  2012 mktex.cnf
-rw-r--r-- 1 root root 838 Jun 16  2013 texmf.cnf
######################################
 md5sums of texmf.d
ca40c66f144b4bafc3e59a2dd32ecb9c  /etc/texmf/texmf.d/00debian.cnf
1df66bc319cec731e202eaf39f5d85e1  /etc/texmf/texmf.d/96JadeTeX.cnf

-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.13-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages texlive-latex-extra depends on:
ii  dpkg                       1.17.6
ii  luatex                     0.76.0-3
ii  preview-latex-style        11.87-1
ii  tex-common                 4.04
ii  texlive-base               2013.20140314-1
ii  texlive-binaries           2013.20130729.30972-2+b2
ii  texlive-latex-recommended  2013.20140314-1
ii  texlive-pictures           2013.20140314-1

Versions of packages texlive-latex-extra recommends:
ii  texlive-latex-extra-doc  2013.20140314-1

Versions of packages texlive-latex-extra suggests:
ii  libfile-which-perl  1.09-1
ii  python-pygments     1.6+dfsg-1

Versions of packages tex-common depends on:
ii  debconf [debconf-2.0]  1.5.52
ii  dpkg                   1.17.6
ii  ucf                    3.0027+nmu1

Versions of packages tex-common suggests:
ii  debhelper  9.20140228

Versions of packages texlive-latex-extra is related to:
ii  tex-common        4.04
ii  texlive-binaries  2013.20130729.30972-2+b2

-- debconf information:
  tex-common/check_texmf_wrong:
  tex-common/check_texmf_missing:

-- 
To use raw power is to make yourself infinitely vulnerable to greater powers.
  -- Bene Gesserit axiom

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--- End Message ---
--- Begin Message --- 
Am 22.04.2012 um 15:27 teilte Juhapekka Tolvanen mit:

Hi,


% java -jar /usr/share/texlive/texmf-dist/scripts/pax/pax.jar kilinorganisaatio.pdf
Exception in thread "main" java.lang.NoClassDefFoundError: org/pdfbox/cos/ICOSVisitor
         at java.lang.Class.getDeclaredMethods0(Native Method)
         at java.lang.Class.privateGetDeclaredMethods(Class.java:2442)
         at java.lang.Class.getMethod0(Class.java:2685)
         at java.lang.Class.getMethod(Class.java:1620)
         at sun.launcher.LauncherHelper.getMainMethod(LauncherHelper.java:488)
         at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:480)
Caused by: java.lang.ClassNotFoundException: org.pdfbox.cos.ICOSVisitor
         at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
         at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
         at java.security.AccessController.doPrivileged(Native Method)
         at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
         at java.lang.ClassLoader.loadClass(ClassLoader.java:423)
         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
         at java.lang.ClassLoader.loadClass(ClassLoader.java:356)
         ... 6 more


I tried that with three different PDF-files. One of them was my
Master's Thesis:
hille@sid-amd64:~$ java -jar /usr/share/texlive/texmf-dist/scripts/pax/pax.jar tps62120.pdf 
* Processing file `tps62120.pdf' ...
hille@sid-amd64:~$ ls -ltr

This should have been solved years ago, we just forgot to close it sorry!

Hilmar
--
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