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Bug#988963: upgrade-reports: upgrade process requires a second "apt full-upgrade"



Hi,

On 23-05-2021 08:55, Bill Allombert wrote:
> On Sat, May 22, 2021 at 11:01:54PM +0200, Paul Gevers wrote:
>> Hi Bill,
>>
>> On 22-05-2021 21:42, Bill Allombert wrote:
>>> Do you have a list of packages whose upgrade triggers this issue ?
>>
>> https://bugs.debian.org/cgi-bin/bugreport.cgi?att=2;bug=988003;filename=Samantha_upgrade_logs.tar.gz;msg=5
>> has a dpkg-get-selection file with the list of installed packages.
> 
> Unfortunately, I do not have enough diskspace try to reproduce it
> right now.
> 
> Generally to find out why a package foo is not upgraded, one do
> apt-get install guile-2.2-libs
> and see what apt reports.

I have used the dpkg-get-selections as input in a stable lxc, changed
the distribution to bullseye, done an $(apt upgrade --without-new-pkgs)
and then tried to run $(apt-get install guile-2.2-libs). Please find the
output below. I *guess* the suspecting things are the pieces which "will
be removed". Do we see anything suspicious?

I'll keep the container for some days (if I don't need the disk space).

Paul

root@stable:/# apt-get install guile-2.2-libs
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer
required:
  libcodec2-0.8.1 libnvpair1linux libuutil1linux libzfs2linux libzpool2linux
  linux-headers-4.19.0-16-common python3.7-minimal
Use 'sudo apt autoremove' to remove them.
The following additional packages will be installed:
  binutils binutils-common binutils-x86-64-linux-gnu coinor-libcbc3
coinor-libcoinmp1v5 cpp
  cpp-10 cups cups-client cups-core-drivers cups-daemon cups-ipp-utils
fcitx-frontend-qt5
  firebird3.0-common firebird3.0-common-doc firebird3.0-server-core
firebird3.0-utils
  fonts-urw-base35 g++ g++-10 gcc gcc-10 gcc-10-base gdc gdc-10 gfortran
gfortran-10
  gir1.2-gst-plugins-base-1.0 gir1.2-gstreamer-1.0 gnat gnat-10
gstreamer1.0-plugins-bad
  hplip hplip-data libalgorithm-diff-xs-perl libapt-pkg6.0 libasan6
libatomic1 libavcodec58
  libavfilter7 libavformat58 libavresample4 libavutil56 libbabl-0.1-0
libbinutils
  libbrlapi0.8 libc-bin libc-dev-bin libc6 libc6-dbg libc6-dev
libc6-i386 libcairo-perl
  libcbor0 libcc1-0 libcodec2-0.9 libcrypt-dev libcrypt1 libcryptsetup12
libctf-nobfd0
  libctf0 libcups2 libcupsimage2 libdav1d4 libdc1394-25
libdouble-conversion3 libdvdread8
  libextutils-depends-perl libextutils-pkgconfig-perl libfbclient2
libffi7 libfido2-1
  libfile-fcntllock-perl libfluidsynth2 libgc1 libgcc-10-dev libgcc-s1
libgdk-pixbuf-2.0-0
  libgdk-pixbuf-xlib-2.0-0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
libgegl-0.4-0
  libgfortran-10-dev libgfortran5 libgirepository-1.0-1 libglib-perl
libglib2.0-0
  libglib2.0-bin libgnat-10 libgnat-util10 libgnutls30 libgomp1 libgpgmepp6
  libgphobos-10-dev libgphobos-dev libgphobos1 libgstreamer-gl1.0-0
  libgstreamer-plugins-bad1.0-0 libgstreamer-plugins-base1.0-0
libgstreamer1.0-0
  libhogweed6 libhpmud0 libhtml-parser-perl libib-util libicu67 libilmbase25
  libinstpatch-1.0-2 libip4tc2 libisl23 libitm1 libjson-c5
libkf5archive5 libkf5attica5
  libkf5auth-data libkf5codecs-data libkf5codecs5 libkf5completion-data
libkf5completion5
  libkf5config-data libkf5configcore5 libkf5configgui5
libkf5configwidgets-data
  libkf5coreaddons-data libkf5coreaddons5 libkf5crash5 libkf5dbusaddons-data
  libkf5dbusaddons5 libkf5guiaddons5 libkf5i18n-data libkf5i18n5
libkf5iconthemes-data
  libkf5itemviews-data libkf5itemviews5 libkf5jobwidgets-data
libkf5jobwidgets5
  libkf5notifications-data libkf5notifications5 libkf5parts-data
libkf5service-data
  libkf5service5 libkf5textwidgets-data libkf5wallet-data libkf5wallet5
  libkf5widgetsaddons-data libkf5widgetsaddons5 libkf5windowsystem-data
libkf5windowsystem5
  libkf5xmlgui-data libkwalletbackend5-5 liblocale-gettext-perl liblsan0
libltc11
  libmailutils7 libmd4c0 libmfx1 libmpdec3 libmysofa1 libnet-dbus-perl
libnet-ssleay-perl
  libnettle8 libnm0 libnma-common libnma0 libnsl-dev libnsl2
libnss-mymachines libnss-nis
  libnss-nisplus libobjc4 libopenexr25 libopenni2-0 libp11-kit0
libpango-perl libperl5.32
  libpocketsphinx3 libpostproc55 libpython3-stdlib libpython3.9
libpython3.9-minimal
  libpython3.9-stdlib libqt5core5a libqt5dbus5 libqt5designer5
libqt5gui5 libqt5help5
  libqt5multimedia5 libqt5multimedia5-plugins libqt5multimediagsttools5
  libqt5multimediawidgets5 libqt5network5 libqt5opengl5 libqt5positioning5
  libqt5printsupport5 libqt5qml5 libqt5qmlmodels5 libqt5quick5
libqt5script5 libqt5sensors5
  libqt5sql5 libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5texttospeech5
  libqt5waylandclient5 libqt5waylandcompositor5 libqt5webchannel5
libqt5webkit5
  libqt5widgets5 libqt5x11extras5 libqt5xml5 libquadmath0 librabbitmq4
libraw20
  libreadline8 librubberband2 libsane-hpaio libsdl2-2.0-0 libsnmp40
libsphinxbase3
  libsrt1.4-gnutls libstdc++-10-dev libstdc++6 libsvn-perl
libswresample3 libswscale5
  libsystemd0 libtdb1 libtext-charwidth-perl libtext-iconv-perl
libtirpc-dev libtsan0
  libubsan1 libudev1 libvirt-clients libvirt-daemon
libvirt-daemon-driver-qemu libvirt0
  libvpx6 libwbclient0 libx264-160 libx265-192 libxapian30 libxcb-res0
libxcb-xinput0
  libxml-parser-perl libxxhash0 linux-compiler-gcc-10-x86
linux-headers-5.10.0-6-amd64
  linux-headers-5.10.0-6-common linux-headers-amd64 linux-kbuild-5.10
locales mailutils
  mailutils-common manpages-mk manpages-nl manpages-pt-br manpages-ro
openssh-client
  openssh-server openssh-sftp-server p11-kit-modules perl perl-base
perl-modules-5.32
  printer-driver-hpcups python3 python3-apt python3-brlapi python3-cairo
  python3-cffi-backend python3-cups python3-dbus
python3-dbus.mainloop.pyqt5 python3-distro
  python3-distutils python3-gi python3-gi-cairo python3-gst-1.0
python3-lib2to3
  python3-libvirt python3-libxml2 python3-minimal python3-pil python3-pyqt5
  python3-pyqt5.sip python3-renderpm python3-reportlab-accel python3-sip
python3-systemd
  python3.9 python3.9-minimal qdbus qdbus-qt5 qt5-gtk-platformtheme
qtwayland5 runit-helper
  samba-common systemd systemd-container systemd-timesyncd
task-albanian-desktop
  task-amharic task-amharic-desktop task-arabic task-arabic-desktop
task-asturian
  task-asturian-desktop task-basque task-basque-desktop task-belarusian
  task-belarusian-desktop task-bengali task-bengali-desktop task-bosnian
  task-bosnian-desktop task-brazilian-portuguese
task-brazilian-portuguese-desktop
  task-british-desktop task-bulgarian task-bulgarian-desktop task-catalan
  task-catalan-desktop task-chinese-s task-chinese-s-desktop task-chinese-t
  task-chinese-t-desktop task-croatian task-croatian-desktop task-cyrillic
  task-cyrillic-desktop task-czech task-czech-desktop task-danish
task-danish-desktop
  task-desktop task-dutch task-dutch-desktop task-dzongkha-desktop
task-english
  task-esperanto task-esperanto-desktop task-estonian
task-estonian-desktop task-finnish
  task-finnish-desktop task-french task-french-desktop task-galician
task-galician-desktop
  task-georgian-desktop task-german task-german-desktop task-greek
task-greek-desktop
  task-gujarati task-gujarati-desktop task-hebrew task-hebrew-desktop
task-hindi
  task-hindi-desktop task-hungarian task-hungarian-desktop task-icelandic
  task-icelandic-desktop task-indonesian-desktop task-irish
task-irish-desktop task-italian
  task-italian-desktop task-japanese task-japanese-desktop
task-kannada-desktop task-kazakh
  task-kazakh-desktop task-khmer task-khmer-desktop task-korean
task-korean-desktop
  task-kurdish task-kurdish-desktop task-laptop task-latvian
task-latvian-desktop
  task-lithuanian task-lithuanian-desktop task-macedonian
task-macedonian-desktop
  task-malayalam task-malayalam-desktop task-marathi task-marathi-desktop
  task-nepali-desktop task-northern-sami task-northern-sami-desktop
task-norwegian
  task-norwegian-desktop task-persian task-persian-desktop task-polish
task-polish-desktop
  task-portuguese task-portuguese-desktop task-punjabi
task-punjabi-desktop task-romanian
  task-romanian-desktop task-russian task-russian-desktop task-serbian
task-serbian-desktop
  task-sinhala-desktop task-slovak task-slovak-desktop task-slovenian
  task-slovenian-desktop task-south-african-english-desktop task-spanish
  task-spanish-desktop task-swedish task-swedish-desktop task-tagalog
task-tamil
  task-tamil-desktop task-telugu task-telugu-desktop task-thai
task-thai-desktop
  task-turkish task-turkish-desktop task-ukrainian task-ukrainian-desktop
  task-uyghur-desktop task-vietnamese-desktop task-welsh task-welsh-desktop
  task-xhosa-desktop tasksel tasksel-data timgm6mb-soundfont udev uim
uim-anthy uim-data
  uim-gtk2.0 uim-gtk2.0-immodule uim-gtk3 uim-gtk3-immodule uim-qt5
uim-qt5-immodule
Suggested packages:
  binutils-doc cpp-doc gcc-10-locales cups-bsd cups-pdf
foomatic-db-compressed-ppds
  | foomatic-db smbclient firebird3.0-server firebird3.0-doc
fonts-texgyre g++-multilib
  g++-10-multilib gcc-10-doc gcc-multilib autoconf automake libtool flex
bison gcc-doc
  gcc-10-multilib gfortran-multilib gfortran-doc gfortran-10-multilib
gfortran-10-doc
  libcoarrays-dev ada-reference-manual-2012 gnat-10-doc gnat-10-sjlj
frei0r-plugins
  hplip-doc glibc-doc libfont-freetype-perl libdvdcss2 gnutls-bin
libvisual-0.4-plugins
  gstreamer1.0-tools qt5-image-formats-plugins qt5-qmltooling-plugins
libstdc++-10-doc
  libvirt-login-shell libvirt-daemon-driver-storage-gluster
  libvirt-daemon-driver-storage-iscsi-direct
libvirt-daemon-driver-storage-rbd
  libvirt-daemon-driver-storage-zfs libvirt-daemon-system numad
xapian-tools mailutils-mh
  mailutils-doc keychain libpam-ssh monkeysphere ssh-askpass molly-guard
ufw perl-doc
  libterm-readline-gnu-perl | libterm-readline-perl-perl
libtap-harness-archive-perl
  python3-doc python3-tk python3-venv python3-apt-dbg python-apt-doc
python-dbus-doc
  python3-dbus-dbg python-pil-doc python3-pil-dbg python3-pyqt5-dbg
python3-renderpm-dbg
  python3.9-venv python3.9-doc policykit-1 fluid-soundfont-gm
Recommended packages:
  colord ipp-usb policykit-1 apt libc-devtools libkf5config-bin
libkf5dbusaddons-bin
  libkf5service-bin pocketsphinx-en-us qtspeech5-speechd-plugin |
qtspeech5-flite-plugin
  libvirt-daemon-driver-lxc libvirt-daemon-driver-vbox
libvirt-daemon-driver-xen
  default-logind | logind | libpam-systemd samba-common-bin fcitx5
fcitx5-chinese-addons
  fcitx5-chewing myspell-cs-cz task-gnome-desktop | task-xfce-desktop |
task-kde-desktop
  | task-lxde-desktop | task-gnome-flashback-desktop | task-cinnamon-desktop
  | task-mate-desktop | task-lxqt-desktop fonts-symbola libenchant-2-voikko
  libreoffice-voikko manpages-fr firefox-esr-l10n-ml | firefox-l10n-ml
giella-sme
  firefox-esr-l10n-en-za | firefox-l10n-en-za uim-xim uim-fep
The following packages will be REMOVED:
  clang clang-7 colord dbus-user-session fcitx-frontend-qt4 g++-8 gcc-8
gdc-8 gfortran-8
  gnat-8 kdiff3 kio libgc1c2 libgcc-8-dev libgfortran-8-dev libgtk2-perl
libkf5auth5
  libkf5configwidgets5 libkf5iconthemes-bin libkf5iconthemes5 libkf5kiocore5
  libkf5kiowidgets5 libkf5parts-plugins libkf5parts5 libkf5textwidgets5
libkf5wallet-bin
  libkf5xmlgui5 libmailutils5 libobjc-8-dev libpam-systemd
libpolkit-qt5-1-1 libqt4-dbus
  libqt4-xml libqtcore4 libqtdbus4 libqtgui4 libreoffice
libreoffice-base libreoffice-calc
  libreoffice-draw libreoffice-gtk2 libreoffice-impress
libreoffice-librelogo
  libreoffice-math libreoffice-nlpsolver libreoffice-report-builder
  libreoffice-report-builder-bin libreoffice-script-provider-python
  libreoffice-sdbc-firebird libreoffice-sdbc-hsqldb
libreoffice-sdbc-postgresql
  libreoffice-voikko libreoffice-writer libsmbclient libstdc++-8-dev
libvirt-daemon-system
  light-locker lightdm linux-compiler-gcc-8-x86
linux-headers-4.19.0-14-amd64
  linux-headers-4.19.0-16-amd64 network-manager network-manager-gnome
packagekit
  packagekit-tools plymouth plymouth-label policykit-1 policykit-1-gnome
python-samba
  python-tdb python3-smbc python3-uno python3.7 qt-at-spi rtkit samba
samba-common-bin
  samba-dsdb-modules samba-libs samba-vfs-modules snapd synaptic
task-xfce-desktop
The following NEW packages will be installed:
  cpp-10 fonts-urw-base35 g++-10 gcc-10 gcc-10-base gdc-10 gfortran-10
gnat-10
  libapt-pkg6.0 libasan6 libbrlapi0.8 libcbor0 libcodec2-0.9
libcrypt-dev libcrypt1
  libctf-nobfd0 libctf0 libdav1d4 libdc1394-25 libdouble-conversion3
libdvdread8
  libextutils-depends-perl libextutils-pkgconfig-perl libffi7 libfido2-1
libfluidsynth2
  libgc1 libgcc-10-dev libgcc-s1 libgdk-pixbuf-2.0-0
libgdk-pixbuf-xlib-2.0-0
  libgfortran-10-dev libgnat-10 libgnat-util10 libgphobos-10-dev
libgphobos1 libhogweed6
  libicu67 libilmbase25 libinstpatch-1.0-2 libip4tc2 libisl23 libjson-c5
libltc11
  libmailutils7 libmd4c0 libmfx1 libmpdec3 libmysofa1 libnettle8
libnma-common libnsl-dev
  libnsl2 libnss-nis libnss-nisplus libopenexr25 libopenni2-0
libperl5.32 libpocketsphinx3
  libpython3.9 libpython3.9-minimal libpython3.9-stdlib libqt5qmlmodels5
librabbitmq4
  libraw20 libreadline8 libsdl2-2.0-0 libsnmp40 libsphinxbase3
libsrt1.4-gnutls
  libstdc++-10-dev libtirpc-dev libvirt-daemon-driver-qemu libvpx6
libx264-160 libx265-192
  libxcb-res0 libxcb-xinput0 libxxhash0 linux-compiler-gcc-10-x86
  linux-headers-5.10.0-6-amd64 linux-headers-5.10.0-6-common
linux-kbuild-5.10 manpages-mk
  manpages-nl manpages-pt-br manpages-ro perl-modules-5.32
python3-distro python3-pyqt5.sip
  python3.9 python3.9-minimal qdbus-qt5 runit-helper systemd-timesyncd
timgm6mb-soundfont
The following packages will be upgraded:
  binutils binutils-common binutils-x86-64-linux-gnu coinor-libcbc3
coinor-libcoinmp1v5 cpp
  cups cups-client cups-core-drivers cups-daemon cups-ipp-utils
fcitx-frontend-qt5
  firebird3.0-common firebird3.0-common-doc firebird3.0-server-core
firebird3.0-utils g++
  gcc gdc gfortran gir1.2-gst-plugins-base-1.0 gir1.2-gstreamer-1.0 gnat
  gstreamer1.0-plugins-bad guile-2.2-libs hplip hplip-data
libalgorithm-diff-xs-perl
  libatomic1 libavcodec58 libavfilter7 libavformat58 libavresample4
libavutil56
  libbabl-0.1-0 libbinutils libc-bin libc-dev-bin libc6 libc6-dbg
libc6-dev libc6-i386
  libcairo-perl libcc1-0 libcryptsetup12 libcups2 libcupsimage2 libfbclient2
  libfile-fcntllock-perl libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
libgegl-0.4-0
  libgfortran5 libgirepository-1.0-1 libglib-perl libglib2.0-0
libglib2.0-bin libgnutls30
  libgomp1 libgpgmepp6 libgphobos-dev libgstreamer-gl1.0-0
libgstreamer-plugins-bad1.0-0
  libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libhpmud0
libhtml-parser-perl libib-util
  libitm1 libkf5archive5 libkf5attica5 libkf5auth-data libkf5codecs-data
libkf5codecs5
  libkf5completion-data libkf5completion5 libkf5config-data
libkf5configcore5
  libkf5configgui5 libkf5configwidgets-data libkf5coreaddons-data
libkf5coreaddons5
  libkf5crash5 libkf5dbusaddons-data libkf5dbusaddons5 libkf5guiaddons5
libkf5i18n-data
  libkf5i18n5 libkf5iconthemes-data libkf5itemviews-data libkf5itemviews5
  libkf5jobwidgets-data libkf5jobwidgets5 libkf5notifications-data
libkf5notifications5
  libkf5parts-data libkf5service-data libkf5service5 libkf5textwidgets-data
  libkf5wallet-data libkf5wallet5 libkf5widgetsaddons-data
libkf5widgetsaddons5
  libkf5windowsystem-data libkf5windowsystem5 libkf5xmlgui-data
libkwalletbackend5-5
  liblocale-gettext-perl liblsan0 libnet-dbus-perl libnet-ssleay-perl
libnm0 libnma0
  libnss-mymachines libobjc4 libp11-kit0 libpango-perl libpostproc55
libpython3-stdlib
  libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5
libqt5multimedia5
  libqt5multimedia5-plugins libqt5multimediagsttools5
libqt5multimediawidgets5
  libqt5network5 libqt5opengl5 libqt5positioning5 libqt5printsupport5
libqt5qml5
  libqt5quick5 libqt5script5 libqt5sensors5 libqt5sql5 libqt5sql5-sqlite
libqt5svg5
  libqt5test5 libqt5texttospeech5 libqt5waylandclient5
libqt5waylandcompositor5
  libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5x11extras5
libqt5xml5 libquadmath0
  librubberband2 libsane-hpaio libstdc++6 libsvn-perl libswresample3
libswscale5
  libsystemd0 libtdb1 libtext-charwidth-perl libtext-iconv-perl libtsan0
libubsan1 libudev1
  libvirt-clients libvirt-daemon libvirt0 libwbclient0 libxapian30
libxml-parser-perl
  linux-headers-amd64 locales mailutils mailutils-common openssh-client
openssh-server
  openssh-sftp-server p11-kit-modules perl perl-base
printer-driver-hpcups python3
  python3-apt python3-brlapi python3-cairo python3-cffi-backend
python3-cups python3-dbus
  python3-dbus.mainloop.pyqt5 python3-distutils python3-gi
python3-gi-cairo python3-gst-1.0
  python3-lib2to3 python3-libvirt python3-libxml2 python3-minimal
python3-pil python3-pyqt5
  python3-renderpm python3-reportlab-accel python3-sip python3-systemd qdbus
  qt5-gtk-platformtheme qtwayland5 samba-common systemd systemd-container
  task-albanian-desktop task-amharic task-amharic-desktop task-arabic
task-arabic-desktop
  task-asturian task-asturian-desktop task-basque task-basque-desktop
task-belarusian
  task-belarusian-desktop task-bengali task-bengali-desktop task-bosnian
  task-bosnian-desktop task-brazilian-portuguese
task-brazilian-portuguese-desktop
  task-british-desktop task-bulgarian task-bulgarian-desktop task-catalan
  task-catalan-desktop task-chinese-s task-chinese-s-desktop task-chinese-t
  task-chinese-t-desktop task-croatian task-croatian-desktop task-cyrillic
  task-cyrillic-desktop task-czech task-czech-desktop task-danish
task-danish-desktop
  task-desktop task-dutch task-dutch-desktop task-dzongkha-desktop
task-english
  task-esperanto task-esperanto-desktop task-estonian
task-estonian-desktop task-finnish
  task-finnish-desktop task-french task-french-desktop task-galician
task-galician-desktop
  task-georgian-desktop task-german task-german-desktop task-greek
task-greek-desktop
  task-gujarati task-gujarati-desktop task-hebrew task-hebrew-desktop
task-hindi
  task-hindi-desktop task-hungarian task-hungarian-desktop task-icelandic
  task-icelandic-desktop task-indonesian-desktop task-irish
task-irish-desktop task-italian
  task-italian-desktop task-japanese task-japanese-desktop
task-kannada-desktop task-kazakh
  task-kazakh-desktop task-khmer task-khmer-desktop task-korean
task-korean-desktop
  task-kurdish task-kurdish-desktop task-laptop task-latvian
task-latvian-desktop
  task-lithuanian task-lithuanian-desktop task-macedonian
task-macedonian-desktop
  task-malayalam task-malayalam-desktop task-marathi task-marathi-desktop
  task-nepali-desktop task-northern-sami task-northern-sami-desktop
task-norwegian
  task-norwegian-desktop task-persian task-persian-desktop task-polish
task-polish-desktop
  task-portuguese task-portuguese-desktop task-punjabi
task-punjabi-desktop task-romanian
  task-romanian-desktop task-russian task-russian-desktop task-serbian
task-serbian-desktop
  task-sinhala-desktop task-slovak task-slovak-desktop task-slovenian
  task-slovenian-desktop task-south-african-english-desktop task-spanish
  task-spanish-desktop task-swedish task-swedish-desktop task-tagalog
task-tamil
  task-tamil-desktop task-telugu task-telugu-desktop task-thai
task-thai-desktop
  task-turkish task-turkish-desktop task-ukrainian task-ukrainian-desktop
  task-uyghur-desktop task-vietnamese-desktop task-welsh task-welsh-desktop
  task-xhosa-desktop tasksel tasksel-data udev uim uim-anthy uim-data
uim-gtk2.0
  uim-gtk2.0-immodule uim-gtk3 uim-gtk3-immodule uim-qt5 uim-qt5-immodule
355 upgraded, 96 newly installed, 84 to remove and 830 not upgraded.
Need to get 305 MB of archives.
After this operation, 147 MB of additional disk space will be used.
Do you want to continue? [Y/n] n
Abort.

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