Re: [Debian-med-packaging] Bug#549427: samtools 0.1.6~dfsg-1 FTBFS on sparc: bus error
severity 549427 whishlist
forwarded 549427 samtools-devel@lists.sourceforge.net
thanks
Le Sat, Oct 03, 2009 at 12:09:59PM +0200, Andreas Barth a écrit :
> Package: samtools
> Version: 0.1.6~dfsg-1
> Severity: serious
>
> Hi,
>
> this package FTBFS on sparc:
>
> /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2 -fPIC" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" -C examples all
> make[1]: Entering directory `/build/buildd-samtools_0.1.6~dfsg-1-sparc-aGfAkY/samtools-0.1.6~dfsg/examples'
> ../samtools faidx ex1.fa
> ../samtools import ex1.fa.fai ex1.sam.gz ex1.bam
> [sam_header_read2] 2 sequences loaded.
> make[1]: *** [ex1.bam] Bus error
> make[1]: *** Deleting file `ex1.bam'
> make[1]: Leaving directory `/build/buildd-samtools_0.1.6~dfsg-1-sparc-aGfAkY/samtools-0.1.6~dfsg/examples'
> make: *** [debian/stamp-makefile-check] Error 2
> dpkg-buildpackage: error: debian/rules build gave error exit status 2
>
> Please see
> https://buildd.debian.org/fetch.cgi?&pkg=samtools&ver=0.1.6%7Edfsg-1&arch=sparc&stamp=1254564365&file=log
> for the ful build log.
Dear sparc porters,
the samtools package contains a program that is intended to be use with large
biological datasets. It was never built with success on sparc, because the
regression tests I implemented (taken from Upstream's example directory) are
failing with a ‘Bus error‘. I just reported this on the upstream mailing list.
Please let me know or contact Upstream directly if you have interest to work on
this issue.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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