Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

To: Andreas Tille <andreas@an3as.eu>
Cc: Giulio Genovese <giulio.genovese@gmail.com>, Debian Med Project List <debian-med@lists.debian.org>, debian-science@lists.debian.org
Subject: Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies
From: Charles Plessy <plessy@debian.org>
Date: Tue, 25 Jun 2024 08:40:46 +0900
Message-id: <[🔎] ZnoD_hh1ed2KDfyk@kumo.plessy.net>
Mail-followup-to: Andreas Tille <andreas@an3as.eu>, Giulio Genovese <giulio.genovese@gmail.com>, Debian Med Project List <debian-med@lists.debian.org>, debian-science@lists.debian.org
In-reply-to: <[🔎] ZnM2lWZWyJhKnfsf@an3as.eu>
References: <[🔎] CABDkqW5DftQ5GdL3K4hxfqoz3hfVvoQxdZJGCjzag_SLx1Y5-w@mail.gmail.com> <[🔎] ZnHZ6uRxD-3uYGFT@an3as.eu> <[🔎] CABDkqW5888yBWFFTUW+_j4hMCbHRZDf_88OoUxtkjoX_aFqYfQ@mail.gmail.com> <[🔎] ZnM2lWZWyJhKnfsf@an3as.eu>

Hi all,

I just uploaded bcftools with the Python dependencies moved to Recomends
because:

 - they will still be installed by default,
 - Bioconda also does not provide them,
 - I was the one who uploaded the update introducing these dependencies.

I can revert the change if there are objections.

Thanks Giulio for the feedback!

Charles

-- 
Charles Plessy                         Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team         http://www.debian.org/devel/debian-med
Tooting from home                  https://framapiaf.org/@charles_plessy
- You  do not have  my permission  to use  this email  to train  an AI -

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  - From: Charles Plessy <plessy@debian.org>

References:
- package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies
  - From: Giulio Genovese <giulio.genovese@gmail.com>
- Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies
  - From: Andreas Tille <andreas@an3as.eu>
- Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies
  - From: Giulio Genovese <giulio.genovese@gmail.com>
- Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies
  - From: Andreas Tille <andreas@an3as.eu>

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