Re: Build time test failures for seaborn 0.9 (Was: seaborn - update to 0.9 - where is debian folder on salsa?)
Quick one
takes exactly 1 argument (0 given)
suggests that bay be upstream switched from nose to pytest and started to use it's magical fixtures. Try using -m pytest instead of -m nose
On January 22, 2019 2:35:50 PM EST, Andreas Tille <andreas@an3as.eu> wrote:
>Hi,
>
>On Tue, Jan 22, 2019 at 08:03:22PM +0100, Andreas Tille wrote:
>>
>> > IgDiscover needs it in a version different from 0.8 to circumvent a
>> > bug that the testing of their plot routine triggers
>> > https://github.com/NBISweden/IgDiscover/issues/78. I somewhat
>happily
>> > address the update to 0.9.
>
>I tried to upgrade seaborn to version 0.9 in Git[1]. Unfortunately
>the build time test suite throws a lot of errors:
>
>
> debian/rules override_dh_auto_test
>make[1]: Entering directory '/build/seaborn-0.9.0'
>xvfb-run --auto-servernum --server-num=20 dh_auto_test
>override_dh_auto_test
>I: pybuild base:217: cd
>/build/seaborn-0.9.0/.pybuild/cpython2_2.7_seaborn/build; python2.7 -m
>nose -v.
>Test that bootstrapping gives the right answer in dumb cases. ... ERROR
>Test that we get a bootstrap array of the right shape. ... ERROR
>...
>======================================================================
>ERROR: Test that bootstrapping gives the right answer in dumb cases.
>----------------------------------------------------------------------
>Traceback (most recent call last):
>File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in
>runTest
> self.test(*self.arg)
>TypeError: test_bootstrap() takes exactly 1 argument (0 given)
>-------------------- >> begin captured logging << --------------------
>matplotlib: DEBUG:
>$HOME=/build/seaborn-0.9.0/.pybuild/cpython2_2.7_seaborn
>matplotlib: DEBUG: matplotlib data path /usr/share/matplotlib2/mpl-data
>matplotlib: DEBUG: loaded rc file
>/build/seaborn-0.9.0/build/matplotlibrc
>matplotlib: DEBUG: matplotlib version 2.2.3
>matplotlib: DEBUG: interactive is False
>matplotlib: DEBUG: platform is linux2
>matplotlib: DEBUG: loaded modules: ['email.MIMEAudio',
>'numpy.core.info', 'nose.plugins.doctest', 'nose.plugins.tempfile',
>'ctypes.os', 'hotshot.warnings', 'runpy', 'gc', 'pkg_resources
>File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in
>runTest
> self.test(*self.arg)
>TypeError: test_bootstrap() takes exactly 1 argument (0 given)
>-------------------- >> begin captured logging << --------------------
>matplotlib: DEBUG:
>$HOME=/build/seaborn-0.9.0/.pybuild/cpython2_2.7_seaborn
>matplotlib: DEBUG: matplotlib data path /usr/share/matplotlib2/mpl-data
>...
>matplotlib.font_manager: DEBUG: createFontDict:
>/usr/share/matplotlib2/mpl-data/fonts/afm/phvbo8an.afm
>matplotlib.font_manager: DEBUG: createFontDict:
>/usr/share/matplotlib2/mpl-data/fonts/pdfcorefonts/Courier-BoldOblique.afm
>matplotlib.font_manager: INFO: generated new fontManager
>matplotlib.backends: DEBUG: backend agg version v2.2
>--------------------- >> end captured logging << ---------------------
>
>======================================================================
>ERROR: Test that we get a bootstrap array of the right shape.
>----------------------------------------------------------------------
>Traceback (most recent call last):
>File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in
>runTest
> self.test(*self.arg)
>TypeError: test_bootstrap_length() takes exactly 1 argument (0 given)
>
>======================================================================
>ERROR: Test that boostrapping a random array stays within the right
>range.
>----------------------------------------------------------------------
>Traceback (most recent call last):
>File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in
>runTest
> self.test(*self.arg)
>TypeError: test_bootstrap_range() takes exactly 1 argument (0 given)
>...
>======================================================================
>FAIL:
>seaborn.tests.test_regression.TestRegressionPlots.test_three_point_colors
>----------------------------------------------------------------------
>Traceback (most recent call last):
>File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in
>runTest
> self.test(*self.arg)
>File
>"/build/seaborn-0.9.0/.pybuild/cpython2_2.7_seaborn/build/seaborn/tests/test_regression.py",
>line 589, in test_three_point_colors
> (1, 0, 0))
>File
>"/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py",
>line 568, in assert_almost_equal
> return assert_array_almost_equal(actual, desired, decimal, err_msg)
>File
>"/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py",
>line 980, in assert_array_almost_equal
> precision=decimal)
>File
>"/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py",
>line 796, in assert_array_compare
> raise AssertionError(msg)
>AssertionError:.
>Arrays are not almost equal to 7 decimals
>
>(mismatch 100.0%)
> x: array([0.4 , 0.7607843, 0.6470588])
> y: array([1, 0, 0])
>
>----------------------------------------------------------------------
>Ran 523 tests in 55.053s
>
>FAILED (SKIP=5, errors=99, failures=28)
>E: pybuild pybuild:338: test: plugin distutils failed with: exit
>code=1: cd /build/seaborn-0.9.0/.pybuild/cpython2_2.7_seaborn/build;
>python2.7 -m nose -v.
>
>
>
>Any idea how to fix this?
>
>Kind regards
>
> Andreas.
>
>[1] https://salsa.debian.org/science-team/seaborn
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