Re: R package CI test failures
On Sat, May 14, 2016 at 03:56:40PM +0200, Andreas Tille wrote:
> >
> > Patch (git format-patch for the repository) is attached. It
> > suppress_test_writing_to_usr.patch, which removed some of the pre-amble
> > to each vignette with one which modifies the paths the vignettes check
> > for their data files. They should now build, but the example data has to
> > be copied to the pwd (run-unit-test has been updated to do this).
>
> I'll check the patch soon. Upgrade of the package is pending anyway but
> there are some missing preconditions for the new version.
Patch commited to Git, waiting for preconditions for new version.
> > >> r-bioc-limma
> > >> ------------
> > >>
> > >> Compared stdout of the test script to a saved copy. It's probably
> > >> sufficient to just run the script and test the exit code, since this
> > >> seems to fail on trivial differences.
> > >
> > > I might have a look. Needs to be updated anyway.
> >
> > Attached a replacement run-unit-test script which does this.
>
> I'll check this out.
Patch commited to Git. Will upload it with new upstream version.
> > In addition, a re-do of the r-bioc-snpstats run-unit-test is attached
> > (three vignettes should be blacklisted, but the current script only gets
> > two of them).
>
> I'll check soon.
The patch was working around a missing r-cran-hexbin. I've just
uploaded r-cran-hexbin and ftpmaster seems to have become very speedy
with r-cran packages so this is available now.
So I think we could stick to the old test, right?
Kind regards
Andreas.
--
http://fam-tille.de
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