Debian Bug#365344: ITP: kalign -- Global and progressive multiple sequence alignment
Dear all,
Here is my latest ITP. There is only one binary file, so this package
will be ready very soon and uploaded to mentors.debian.org. The
rationale for packaging such small program is that there is a
meta-aligners which appeared in the field, which pool the output of many
different programs to produce a higher-quality alignment. Apt-get
installing the meta-aligner and pulling the dependancies would be a
must...
Have a nice week-end,
--
Charles Plessy
Wako, Saitama, Japan
----- Forwarded message from Charles Plessy <charles-debian-nospam@plessy.org> -----
Date: Sat, 29 Apr 2006 21:00:03 +0900
From: Charles Plessy <charles-debian-nospam@plessy.org>
Subject: Bug#365344: ITP: kalign -- Global and progressive multiple sequence alignment
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>
Package name : kalign
Version : 1.04
Upstream Author : Timo Lassmann <timo.lassmann@cgb.ki.se>
URL : http://msa.cgb.ki.se/downloads/kalign-1.04.tgz
License : GPL
Description : Global and progressive multiple sequence alignment
Kalign is a command line tool to perform multiple alignment of
biological sequences. It employs the Wu-Manber string-matching
algorithm, to improve both the accuracy and speed of the alignment.
It uses global, progressive alignment approach, enriched by employing
an approximate string-matching algorithm to calculate sequence
distances and by incorporating local matches into the otherwise global
alignment. In comparisons made by its authors, Kalign was about 10
times faster than ClustalW and, depending on the alignment size, up to
50 times faster than popular iterative methods. It has been published
in Lassmann and Sonnhammer, BMC Bioinformatics 2005, 6:298.
.
Homepage: http://msa.cgb.ki.se
-- System Information:
Debian Release: testing/unstable
APT prefers testing
APT policy: (500, 'testing')
Architecture: powerpc (ppc64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
----- End forwarded message -----
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