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Bug#800489: ITP: ruby-fix-trinity-output -- Fix output fastq files from trinityrnaseq



Package: wnpp
Owner: "Debian Ruby Team" <debian-ruby@lists.debian.org>
Severity: wishlist
X-Debbugs-CC: debian-ruby@lists.debian.org

* Package name    : ruby-fix-trinity-output
  Version         : 1.0.0
  Upstream Author : Chris Boursnell <cmb211@cam.ac.uk>
* URL             : http://rubygems.org/gems/fix-trinity-output
* License         : MIT
  Programming Lang: Ruby
  Description     : Fix output fastq files from trinityrnaseq

trinityrnaseq outputs fastq files that have been 'corrected'
 
Unfortunately these files are no longer properly paired and therefore can't be used in most aligners such as bowtie2 and snap-aligner. This script attempts to fix that and produce 2 properly paired fastq files and a fastq file containing single reads

This package is a dependency for 'transrate'.

This package will be maintained as part of the Debian Ruby packaging team.


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