Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics))
Hi Graham,
Am Wed, Dec 13, 2023 at 12:13:54PM -0100 schrieb Graham Inggs:
> I've added removal hints for r-bioc-dss and r-bioc-demixt. Please
> file an RC bug for r-bioc-dss to prevent it from migrating straight
> back (r-bioc-demixt already has #1058278).
Done for r-bioc-dss.
> One problem I see at [1]:
>
> Not built on buildd: arch all binaries uploaded by tille, a new
> source-only upload is needed to allow migration
I do not understand this line. What exact package needs a source-only
upload?
> Remember, all r-bioc-* packages need to migrate together, so all of
> your uploads need to be ready before r-bioc-biocgenerics can migrate.
> I checked only the first few "Migrates after" links from [1], and
> found at least these packages still show autopkgtest regressions
> [2][3][4][5][6].
Thank you for these links. Could you please explain how I can obtain
these myself? Is there any page I could look at for some kind of
summary?
Now to these links:
> > [1] https://tracker.debian.org/pkg/r-bioc-biocgenerics
OK, no idea what source-only upload is needed (see above).
> [2] https://tracker.debian.org/pkg/r-bioc-beachmat
This shows:
autopkgtest for r-bioc-biocsingular/1.16.0+ds-1: amd64: Regression or new test...
but that version of r-bioc-biocsingular is in testing and bound
to fail. Version 1.18.0+ds matches to BioC API 3.18.
Autopkgtest in Salsa CI works as expected. When looking
in debci (https://ci.debian.net/packages/r/r-bioc-biocsingular/unstable/amd64/40579344/)
the test suite error is caused by pandoc.
> [3] https://tracker.debian.org/pkg/r-bioc-biobase
Same here:
autopkgtest for r-bioc-degreport/1.36.0+dfsg-1: amd64: Regression or new test...
we have r-bioc-degreport 1.38.3+dfsg-1 in unstable matching BioC API
3.18. Failures with any former version is bound to fail.
Similarly:
autopkgtest for r-bioc-multiassayexperiment/1.26.0+dfsg-1: amd64: Regression or new test...
version in testing not unstable
> [4] https://tracker.debian.org/pkg/r-bioc-biocbaseutils
See above
autopkgtest for r-bioc-multiassayexperiment/1.26.0+dfsg-1: amd64: Regression or new test...
> [5] https://tracker.debian.org/pkg/r-bioc-biocio
> [6] https://tracker.debian.org/pkg/r-bioc-biostrings
Same problem as above
autopkgtest for r-bioc-bsgenome/1.68.0-1: amd64: Regression or new test...
in both cases.
I admit I have no idea what to do. If the migration issues are
caused by running tests against versions in testing which can't
pass something is broken. As you wrote above
> Remember, all r-bioc-* packages need to migrate together,
... yes, that's why running debci tests is not needed - at least as far
as I understood the purpose of a transition. Please let me know if I
can do something to fix the situation, but for the moment I have no idea
what to do.
Sorry if I'm a bit slow to catch on.
Kind regards
Andreas.
--
http://fam-tille.de
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