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Bug#1056330: marked as done (bookworm-pu: package toil/5.9.2-2+deb12u1)

Your message dated Sat, 09 Dec 2023 10:20:37 +0000
with message-id <83d3a3621a56b9af1e20d36ee9d390a46ab64a8a.camel@adam-barratt.org.uk>
and subject line Closing requests for updates included in 12.3 point release
has caused the Debian Bug report #1056330,
regarding bookworm-pu: package toil/5.9.2-2+deb12u1
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
1056330: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1056330
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: release.debian.org
Severity: normal
Tags: bookworm
User: release.debian.org@packages.debian.org
Usertags: pu
X-Debbugs-Cc: toil@packages.debian.org, sanvila@debian.org
Control: affects -1 + src:toil

[ Reason ]
This upload fixes Bug#1031192. FTBFS on single-cpu systems.

[ Impact ]
Anybody trying to build the package from source in stable on a single-cpu
system will see that the package unexpectedly FTBFS.

[ Tests ]
I've tested that the updated package builds ok in all systems.

[ Risks ]
There are no actual code changes in the program, only in the
way the tests are executed.

[ Checklist ]
  [X] *all* changes are documented in the d/changelog
  [X] I reviewed all changes and I approve them
  [X] attach debdiff against the package in (old)stable
  [X] the issue is verified as fixed in unstable

[ Changes ]
Backport patch from unstable to run the tests using
a single CPU.

[ Other info ]
The package is already uploaded.
diff -Nru toil-5.9.2/debian/changelog toil-5.9.2/debian/changelog
--- toil-5.9.2/debian/changelog	2023-02-06 19:04:14.000000000 +0100
+++ toil-5.9.2/debian/changelog	2023-11-21 00:35:00.000000000 +0100
@@ -1,3 +1,11 @@
+toil (5.9.2-2+deb12u1) bookworm; urgency=medium
+
+  * Team upload.
+  * Apply patch by Michael R. Crusoe to request a single core
+    in the tests. Closes: #1031192.
+
+ -- Santiago Vila <sanvila@debian.org>  Tue, 21 Nov 2023 00:35:00 +0100
+
 toil (5.9.2-2) unstable; urgency=medium
 
   * Add patch to handle errors when testing on ec2.
diff -Nru toil-5.9.2/debian/patches/fewer_cores toil-5.9.2/debian/patches/fewer_cores
--- toil-5.9.2/debian/patches/fewer_cores	1970-01-01 01:00:00.000000000 +0100
+++ toil-5.9.2/debian/patches/fewer_cores	2023-11-21 00:34:08.000000000 +0100
@@ -0,0 +1,37 @@
+From: Michael R. Crusoe <crusoe@debian.org>
+Subject: Tests: only request a single core
+Bugs: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1031192
+
+--- a/src/toil/test/src/helloWorldTest.py
++++ b/src/toil/test/src/helloWorldTest.py
+@@ -24,7 +24,7 @@
+ 
+ class HelloWorld(Job):
+     def __init__(self):
+-        Job.__init__(self,  memory=100000, cores=2, disk="3G")
++        Job.__init__(self,  memory=100000, cores=1, disk="3G")
+ 
+     def run(self, fileStore):
+         fileID = self.addChildJobFn(childFn, cores=1, memory="1M", disk="3G").rv()
+--- a/src/toil/test/src/realtimeLoggerTest.py
++++ b/src/toil/test/src/realtimeLoggerTest.py
+@@ -57,7 +57,7 @@
+ 
+ class LogTest(Job):
+     def __init__(self):
+-        Job.__init__(self, memory=100000, cores=2, disk='3G')
++        Job.__init__(self, memory=100000, cores=1, disk='3G')
+ 
+     def run(self, fileStore):
+         RealtimeLogger.info('This should be logged at info level')
+--- a/src/toil/test/src/userDefinedJobArgTypeTest.py
++++ b/src/toil/test/src/userDefinedJobArgTypeTest.py
+@@ -59,7 +59,7 @@
+ 
+ class JobClass(Job):
+     def __init__(self, level, foo):
+-        Job.__init__(self, memory=100000, cores=2, disk="300M")
++        Job.__init__(self, memory=100000, cores=1, disk="300M")
+         self.level = level
+         self.foo = foo
+ 
diff -Nru toil-5.9.2/debian/patches/series toil-5.9.2/debian/patches/series
--- toil-5.9.2/debian/patches/series	2023-02-06 19:01:55.000000000 +0100
+++ toil-5.9.2/debian/patches/series	2023-11-21 00:34:08.000000000 +0100
@@ -10,3 +10,4 @@
 atomic_copy_as_alternative.patch
 python3_in_doc.patch
 avoid_boto
+fewer_cores

--- End Message ---
--- Begin Message --- 
Package: release.debian.org
Version: 12.3

Hi,

Each of the updates discussed in these requests was included in this
morning's 12.3 bookworm point release.

Regards,

Adam

--- End Message ---
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