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Bug#998057: transition: r-api-bioc-3.14



On 2021-12-01 22:46:45 +0530, Nilesh Patra wrote:
> On 1 December 2021 9:36:00 pm IST, Andreas Tille <tille@debian.org> wrote:
> >Hi Graham,
> >
> >Am Wed, Dec 01, 2021 at 01:33:15PM +0200 schrieb Graham Inggs:
> >> On Wed, 1 Dec 2021 at 13:03, Nilesh Patra <nilesh@riseup.net> wrote:
> >> > One i386 autopkgtest failure for r-bioc-biocparallel is stalling the entire migration. Rest stuff looks okay.
> >> 
> >> There's at least one more regression; in gffread, caused by
> >> r-bioc-gviz [1].  Please check that each r-bioc* package is ready to
> >> migrate.
> >
> >I absolutely fail to understand why the excuses mechanism is actually
> >blaming r-bioc-gviz to be responsible to cause that autopkgtest error.
> >I even fail to understand why it ends up in an error while there are
> >warnings only.  I've re-triggered gffread CI test in Salsa[2] which is
> >passing.
> >
> >Any idea what might be wrong here?
> >
> >Kind regards
> >
> >       Andreas.
> > 
> >> [1] https://qa.debian.org/excuses.php?package=r-bioc-gviz
> >[2] https://salsa.debian.org/med-team/gffread/-/jobs/2236429
> >
> 
> Because the version from testing 0.12.1-4 is failing which does not have allow-stderr restriction.
> 
> The new version 0.12.7 you uploaded has it. The new version is blocked from migrating because of libgclib.
> libgclib is further blocked from migrating because of ABI breakage. And this change is in NEW.
> 
> So we are moving in circles. Why are simple changes so slow so god damn difficult to do at times?!
> 
> I guess a not very good workaround would be to add an explicit breaks for gffread (<< 0.12.1-4~)  in r-bioc-gviz that would tell Britney the right thing to do. More ideas welcome.

Let's not do that. As this only produces a warning this won't be an
issue for users. I think this can be solved with the appopriate hint.

The point of Graham's mail was that r-bioc-biocparallel was not the only
package that would have needed a hint. If you want to speed this up, we
need a full list of packages that need to be urgented or need their
autopkgtest regressions investigated.

Cheers

> 
> Nilesh

-- 
Sebastian Ramacher

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