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Bug#998057: transition: r-api-bioc-3.14



On 2021-12-01 17:06:00 +0100, Andreas Tille wrote:
> Hi Graham,
> 
> Am Wed, Dec 01, 2021 at 01:33:15PM +0200 schrieb Graham Inggs:
> > On Wed, 1 Dec 2021 at 13:03, Nilesh Patra <nilesh@riseup.net> wrote:
> > > One i386 autopkgtest failure for r-bioc-biocparallel is stalling the entire migration. Rest stuff looks okay.
> > 
> > There's at least one more regression; in gffread, caused by
> > r-bioc-gviz [1].  Please check that each r-bioc* package is ready to
> > migrate.
> 
> I absolutely fail to understand why the excuses mechanism is actually
> blaming r-bioc-gviz to be responsible to cause that autopkgtest error.
> I even fail to understand why it ends up in an error while there are
> warnings only.  I've re-triggered gffread CI test in Salsa[2] which is
> passing.
> 
> Any idea what might be wrong here?

The tests print warnings on stderr. Output on stderr is considered a
test failure if the allow-stderr restriction is not set.

Cheers

> 
> Kind regards
> 
>        Andreas.
>  
> > [1] https://qa.debian.org/excuses.php?package=r-bioc-gviz
> [2] https://salsa.debian.org/med-team/gffread/-/jobs/2236429
> 
> -- 
> http://fam-tille.de

-- 
Sebastian Ramacher

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