Bug#923965: marked as done (unblock: libbpp-seq/2.4.1-3)

To: Ivo De Decker <ivodd@respighi.debian.org>
Subject: Bug#923965: marked as done (unblock: libbpp-seq/2.4.1-3)
From: "Debian Bug Tracking System" <owner@bugs.debian.org>
Date: Mon, 11 Mar 2019 19:48:03 +0000
Message-id: <[🔎] handler.923965.D923965.15523334441747.ackdone@bugs.debian.org>
Reply-to: 923965@bugs.debian.org
References: <E1h3QqA-0004PN-8a@respighi.debian.org> <[🔎] 155198202076.23665.1480263263605284797.reportbug@mail.an3as.eu>

Your message dated Mon, 11 Mar 2019 19:44:02 +0000
with message-id <E1h3QqA-0004PN-8a@respighi.debian.org>
and subject line unblock libbpp-seq
has caused the Debian Bug report #923965,
regarding unblock: libbpp-seq/2.4.1-3
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
923965: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=923965
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

--- Begin Message ---

To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: unblock: libbpp-seq/2.4.1-3
From: Andreas Tille <tille@debian.org>
Date: Thu, 07 Mar 2019 19:07:00 +0100
Message-id: <[🔎] 155198202076.23665.1480263263605284797.reportbug@mail.an3as.eu>

Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: unblock

Please unblock package libbpp-seq


 libbpp-seq (2.4.1-3) unstable; urgency=medium
 .
   * Rebuild for new version of gcc to fix symbols
     Closes: #923954
   * Standards-Version: 4.3.0


unblock libbpp-seq/2.4.1-3

-- System Information:
Debian Release: 9.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 4.9.0-6-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

diff -Nru libbpp-seq-2.4.1/debian/changelog libbpp-seq-2.4.1/debian/changelog
--- libbpp-seq-2.4.1/debian/changelog	2018-12-03 08:15:45.000000000 +0100
+++ libbpp-seq-2.4.1/debian/changelog	2019-03-07 18:56:16.000000000 +0100
@@ -1,3 +1,11 @@
+libbpp-seq (2.4.1-3) unstable; urgency=medium
+
+  * Rebuild for new version of gcc to fix symbols
+    Closes: #923954
+  * Standards-Version: 4.3.0
+
+ -- Andreas Tille <tille@debian.org>  Thu, 07 Mar 2019 18:56:16 +0100
+
 libbpp-seq (2.4.1-2) unstable; urgency=medium
 
   [ Jelmer Vernooĳ ]
diff -Nru libbpp-seq-2.4.1/debian/control libbpp-seq-2.4.1/debian/control
--- libbpp-seq-2.4.1/debian/control	2018-12-03 08:15:45.000000000 +0100
+++ libbpp-seq-2.4.1/debian/control	2019-03-07 18:56:16.000000000 +0100
@@ -8,7 +8,7 @@
                cmake,
                d-shlibs (>= 0.80),
                libbpp-core-dev (>= 2.4.1)
-Standards-Version: 4.2.1
+Standards-Version: 4.3.0
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
diff -Nru libbpp-seq-2.4.1/debian/libbpp-seq12.symbols libbpp-seq-2.4.1/debian/libbpp-seq12.symbols
--- libbpp-seq-2.4.1/debian/libbpp-seq12.symbols	2018-12-03 08:15:45.000000000 +0100
+++ libbpp-seq-2.4.1/debian/libbpp-seq12.symbols	2019-03-07 18:56:16.000000000 +0100
@@ -328,7 +328,6 @@
  _ZN3bpp16AbstractAlphabet8getStateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1
  _ZN3bpp16AbstractAlphabet8getStateEi@Base 2.4.1
  _ZN3bpp16AbstractAlphabet8setStateEmPNS_13AlphabetStateE@Base 2.4.1
- _ZN3bpp16AbstractAlphabetC2ERKS0_@Base 2.4.1
  _ZN3bpp16AbstractAlphabetD2Ev@Base 2.4.1
  _ZN3bpp16AbstractCoreSite11setPositionEi@Base 2.4.1
  _ZN3bpp16ApplicationTools12getParameterIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS8_S8_St4lessIS8_ESaISt4pairIS9_S8_EEES2_SA_bi@Base 2.4.1
@@ -1710,13 +1709,13 @@
  _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.4.1
  _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.4.1
+ _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1
+ _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1
  _ZNSt11_Deque_baseIiSaIiEE17_M_initialize_mapEm@Base 2.4.1
  _ZNSt11_Deque_baseIiSaIiEED1Ev@Base 2.4.1
  _ZNSt11_Deque_baseIiSaIiEED2Ev@Base 2.4.1
  _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.4.1
  _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_@Base 2.4.1
- _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixERS9_@Base 2.4.1
- _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorImSaImEESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.4.1
  _ZNSt3mapIiiSt4lessIiESaISt4pairIKiiEEEixEOi@Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1
  _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1
@@ -1813,7 +1812,6 @@
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE11equal_rangeERS7_@Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE12_M_erase_auxESt23_Rb_tree_const_iteratorISB_E@Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSJ_PSt13_Rb_tree_nodeISB_E@Base 2.4.1
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueIS6_IS5_SA_EEES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 2.4.1
  (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE17_M_emplace_uniqueIJS6_IS5_SA_EEEES6_ISt17_Rb_tree_iteratorISB_EbEDpOT_@Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.4.1
  _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8SequenceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.4.1
@@ -1851,6 +1849,7 @@
  _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.1
  _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.1
  _ZNSt8_Rb_treeIcSt4pairIKcdESt10_Select1stIS2_ESt4lessIcESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.1
+ _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.4.1
  _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.1
  _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.1
  _ZNSt8_Rb_treeIdSt4pairIKdmESt10_Select1stIS2_ESt4lessIdESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.4.1
@@ -1873,6 +1872,7 @@
  _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E@Base 2.4.1
+ _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.1
  _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.1
@@ -1884,10 +1884,10 @@
  _ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmPN3bpp13SiteContainerEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E@Base 2.4.1
+ _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOmEESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.1
  _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.1
- _ZSt11__remove_ifIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops16_Iter_equals_valIKiEEET_SB_SB_T0_@Base 2.4.1
  _ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElS5_NS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_T0_SH_T1_T2_@Base 2.4.1
  _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEENS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_@Base 2.4.1
  _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElNS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_T1_@Base 2.4.1
@@ -2460,7 +2460,6 @@
  _ZTVN3bpp7ClustalE@Base 2.4.1
  _ZTVN3bpp7GenBankE@Base 2.4.1
  _ZTVN3bpp8BLOSUM50E@Base 2.4.1
- _ZTVN3bpp8ClonableE@Base 2.4.1
  _ZTVN3bpp8DNAToRNAE@Base 2.4.1
  _ZTVN3bpp8PhredPhdE@Base 2.4.1
  _ZTVN3bpp9PhredPolyE@Base 2.4.1

--- End Message ---

--- Begin Message ---

To: 923965-done@bugs.debian.org

Subject: unblock libbpp-seq

From: Ivo De Decker <ivodd@respighi.debian.org>

Date: Mon, 11 Mar 2019 19:44:02 +0000

Message-id: <E1h3QqA-0004PN-8a@respighi.debian.org>
Unblocked libbpp-seq.
--- End Message ---

Reply to:

References:
- Bug#923965: unblock: libbpp-seq/2.4.1-3
  - From: Andreas Tille <tille@debian.org>

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