Bug#860874: unblock: debian-science/1.7
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: unblock
Please unblock package debian-science
This is the usual update of Debian Science metapackages at the end (or
rather close to the end) of the release cycle. Since we do not expect
severe changes in the package pool regarding packages that are relevant
for the Debian Science team this upload of the metapackages is
reflecting the package pool that is expected to be released with
Stretch.
Please note: Due to the creation method of the metapackages those
packages that were removed from testing were just "degraded" from
Recommends to Suggests. In the usual maintenance process also packages
that were added to unstable also end up with Suggests since this is the
usual metapackage layout users are comfortable with. While we are
aware that this avoids the "minimum change freeze policy" this feature
of metapackages was accepted in all previous release processes.
BTW, to enhance the overview about changes inside the dependency code in
a GSoC project code for automatic changelog generation was written to
possibly help the release team. As I mentioned in the bug report about
Debian Med where I unfortunately forgot to activate this code this is
now included. Please let me know whether you like this longish
changelog that reflects changes inside the so called tasks packages
which are processed by blends-dev to create the according dependency
relations.
As I said I had some unfortunately private discussion in German about
the sense of this. I'd happily receive your hint what you would like
more - the short Debian Med packages changelog or the long changelog in
the current Debian Science package. I'd happily adapt to your
preference specifically since we are planing to rework this code at
next DebCamp. Please also note that the code generates
diff -Nru debian-science-1.6/dependency_data/debian-science_1.6.json debian-science-1.7/dependency_data/debian-science_1.6.json
--- debian-science-1.6/dependency_data/debian-science_1.6.json 1970-01-01 01:00:00.000000000 +0100
+++ debian-science-1.7/dependency_data/debian-science_1.6.json 2017-01-24 17:52:54.000000000 +0100
...
which contains some statistical data which also are bluring the debdiff.
These data are not used in the resulting binary debs but are just used
for graphing the development of the source package. It should be fine
to ignore this diff.
Kind regards and thanks for your work as release team and sorry if these
metapackages might contain more noise than a usual update in freeze
Andreas.
unblock debian-science/1.7
-- System Information:
Debian Release: 8.7
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru debian-science-1.6/debian/changelog debian-science-1.7/debian/changelog
--- debian-science-1.6/debian/changelog 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/debian/changelog 2017-01-24 17:52:54.000000000 +0100
@@ -1,9 +1,364 @@
+debian-science (1.7) unstable; urgency=medium
+
+ * Fix typo in astro-virtual-observatory and again depend on it
+ * Remove inactive Uploaders, add Ole Streicher
+
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-viewing-dev
+ added:
+ Depends: python3-vispy | python-vispy, libgl2ps-dev,
+ python3-qwt | python-qwt,
+ libqglviewer-dev-qt5 | libqglviewer-dev-qt4, libgts-dev
+ Suggests: libcollada-dom2.4-dp-dev
+ -science-robotics
+ added:
+ Depends: ros-opencv-apps
+ -science-engineering
+ added:
+ Depends: python-admesh | python3-admesh, python-dolfin, fenics,
+ openmeca, calculix-cgx
+ Suggests: calculix-cgx-examples, calculix-ccx-test, calculix-ccx-doc
+ -science-simulations
+ added:
+ Depends: calculix-cgx
+ Suggests: calculix-cgx-examples, calculix-ccx-test, calculix-ccx-doc
+ -science-tools
+ added:
+ Depends: python3-h5netcdf | python-h5netcdf
+ Suggests: python3-pweave
+ -science-linguistics
+ added:
+ Depends: r-cran-lexrankr, r-cran-snowballc
+ Suggests: r-cran-nlp,
+ python3-snowballstemmer | python-snowballstemmer
+ -science-dataacquisition
+ added:
+ Depends: libgetdata-tools
+ -science-statistics
+ added:
+ Depends: r-cran-bradleyterry2, datamash, r-cran-corpcor, pspp
+ Suggests: r-cran-brglm, r-cran-gnm
+ -science-numericalcomputation
+ added:
+ Depends: xtensor-dev, calculix-cgx, toulbar2, xtensor-python-dev,
+ coinor-cbc, python3-sparse | python-sparse
+ Suggests: python3-dbfread, python3-spyder-line-profiler,
+ python3-spyder-unittest, python3-agate-dbf,
+ python3-spyder-memory-profiler, python3-leather,
+ calculix-cgx-examples, python3-agate-excel, python3-agate-sql,
+ coinor-libcoinmp-dev, calculix-ccx-test, calculix-ccx-doc,
+ evolver-ogl | evolver-nox, python3-agate
+ -science-machine-learning
+ added:
+ Depends: toulbar2
+ -science-mathematics-dev
+ added:
+ Depends: libp4est-dev, fenics, slepc-dev, libdeal.ii-dev,
+ coinor-libcoinmp-dev, python-slepc4py,
+ libjgrapht0.8-java | libjgrapht0.6-java, jel-java,
+ trilinos-all-dev, python-petsc4py
+ Suggests: libtrilinos-dev
+ removed:
+ Depends: dolfin-dev, libtrilinos-dev, libslepc3.4.2-dev
+ -science-mathematics
+ added:
+ Depends: python-dolfin, toulbar2, python-ufl, coinor-cbc
+ Recommends: python-sagenb-export | python3-sagenb-export, python-sagenb
+ Suggests: evolver-ogl | evolver-nox
+ removed:
+ Depends: polybori, polybori-gui, sfc, dolfin-bin
+ -science-electronics
+ added:
+ Depends: dfcgen-gtk
+ -science-engineering-dev
+ added:
+ Depends: libp4est-dev, trilinos-all-dev
+ removed:
+ Suggests: calculix-ccx-test, calculix-ccx-doc
+ -science-viewing
+ added:
+ Depends: giza-dev, gfsview
+ Suggests: libgts-bin
+ -science-physics-dev
+ added:
+ Depends: libp4est-dev, python-dolfin, fenics, trilinos-all-dev,
+ libdeal.ii-dev
+ -science-dataacquisition-dev
+ added:
+ Depends: libgetdata-perl, python3-guidata | python-guidata,
+ libgetdata-dev, python3-pygetdata | python-pygetdata
+ Suggests: r-cran-mi, r-cran-ncdf4
+ -science-physics
+ added:
+ Depends: toulbar2
+ Suggests: evolver-ogl | evolver-nox
+ -science-imageanalysis-dev
+ added:
+ Suggests: lib3ds-dev
+ -science-logic
+ added:
+ Depends: coinor-symphony, toulbar2
+ Suggests: coinor-libcoinmp-dev
+
+ -- Ole Streicher <olebole@debian.org> Tue, 24 Jan 2017 17:52:54 +0100
+
debian-science (1.6) unstable; urgency=medium
+ [ Alastair McKinstry ]
+ * Update meteorlogy, meteorology-dev tasks,
+ changes in jessie -> stretch
+
[ Ole Streicher ]
* Disable default installation for special science fields
- -- Ole Streicher <olebole@debian.org> Thu, 28 Apr 2016 11:51:50 +0200
+ [ Andreas Tille ]
+ * rebuild using blends-dev 0.6.95
+ * Depends to only Suggests: astro-virtualobservator
+
+ [ Ralf Treinen ]
+ * Drop package "confluence" from the electronics task
+
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-economics
+ added:
+ Depends: r-cran-dynlm, python3-numpy | python-numpy,
+ python3-pandas | python-pandas, r-cran-isocodes,
+ python3-simpy | python-simpy, python3-scipy | python-scipy,
+ r-cran-nleqslv, python3-matplotlib | python-matplotlib
+ removed:
+ Depends: python-simpy, python-matplotlib, python-numpy, python-pandas,
+ python-scipy
+ -science-robotics
+ added:
+ Depends: ros-perception, ros-desktop, ros-simulators, gazebo7,
+ ros-desktop-full
+ Suggests: gnuplot
+ removed:
+ Depends: roslang, python-roscreate, python-rosunit, ros-mk, rosbuild,
+ python-rosmake, python-rosclean, gazebo5, rosbash
+ Suggests: gnuplot | gnuplot5
+ -science-robotics-dev
+ added:
+ Depends: libignition-msgs-dev, libpcl-dev, ros-desktop-full-lisp-dev,
+ ros-desktop-dev, ros-simulators-dev,
+ ros-desktop-full-python-dev, libsdformat4-dev,
+ ros-desktop-full-dev, ros-perception-dev, libgazebo7-dev,
+ libkido-dev
+ removed:
+ Depends: libgazebo5-dev, libsdformat-dev
+ -science-simulations
+ added:
+ Depends: openfoam, python-pysph, gazebo7,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi
+ removed:
+ Depends: freefoam, pysph
+ -science-viewing-dev
+ added:
+ Depends: libglm-dev, libforge-dev, libgli-dev, libslvs1-dev,
+ libglbinding-dev, libglobjects-dev,
+ python3-matplotlib-venn | python-matplotlib-venn,
+ libgtkdatabox-dev
+ removed:
+ Depends: libgtkdatabox-0.9.2-0-dev
+ -science-tools
+ added:
+ Depends: science-workflow, hdf-compass,
+ python3-pybind11 | python-pybind11,
+ python3-hdf5storage | python-hdf5storage,
+ python3-h5py | python-h5py
+ Suggests: python3-pydap | python-pydap
+ removed:
+ Depends: python-h5py | python3-h5py, cwltool, snakemake, pegasus-wms,
+ python-hdf5storage | python3-hdf5storage
+ -science-geography
+ added:
+ Depends: r-cran-fields, hydroffice.bag-tools,
+ python3-cartopy | python-cartopy, r-cran-raster
+ -science-linguistics
+ added:
+ Depends: hfst, lttoolbox, uctodata, python3-pynlpl | python-pynlpl,
+ giella-sme, hfst-ospell
+ Suggests: apertium-mk-en, apertium-en-gl, apertium-id-ms, r-cran-tm,
+ apertium-eo-fr, apertium-isl, apertium-kaz-tat, apertium-srd,
+ apertium-is-sv, apertium-spa, apertium-ca-it, apertium-urd,
+ apertium-hbs-slv, apertium-hin, apertium-sme-nob,
+ apertium-eu-en, apertium-es-ast, apertium-spa-arg, apertium-tat,
+ apertium-eo-en, apertium-kaz, apertium-arg, apertium-ita,
+ apertium-mk-bg, apertium-es-it, apertium-hbs-mkd,
+ apertium-swe-nor, apertium-hbs-eng, apertium-srd-ita,
+ python3-nltk | python-nltk, apertium-mlt-ara, apertium-isl-eng,
+ apertium-hbs, apertium-urd-hin, apertium-arg-cat
+ removed:
+ Suggests: python-nltk, python3-nltk
+ -science-statistics
+ added:
+ Depends: r-cran-modelmetrics, r-cran-lavaan, r-cran-sem, r-cran-qvcalc,
+ r-cran-geepack, r-cran-ca, r-cran-gam, r-cran-randomfieldsutils,
+ r-cran-glmnet, r-cran-raschsampler, r-cran-erm, r-cran-caret,
+ r-cran-reshape2, r-cran-arm, r-cran-nmf, r-cran-goftest,
+ r-cran-maptree, r-cran-ggplot2
+ Suggests: r-cran-minpack.lm, r-cran-luminescence, r-cran-princurve,
+ r-cran-rngtools, r-cran-bbmle, r-cran-ellipse, r-cran-irlba,
+ r-cran-mlmrev
+ -science-imageanalysis
+ removed:
+ Depends: python-imageio
+ -science-machine-learning
+ added:
+ Depends: torch-core-free, r-cran-mlbench, libmlpack-dev,
+ caffe-cpu | caffe-cuda
+ -science-mathematics-dev
+ added:
+ Depends: python3-pynfft | python-pynfft, python3-numpy | python-numpy,
+ libprimesieve6-dev, python3-dtcwt | python-dtcwt,
+ python3-pyoperators | python-pyoperators, libflint-arb-dev,
+ cppad, python3-numexpr | python-numexpr, libsopt-dev,
+ python3-pyviennacl | python-pyviennacl, librw-dev,
+ python3-gimmik, python3-linop | python-linop
+ Suggests: libdune-functions-dev, libdune-pdelab-dev, libcblas-dev,
+ libdune-grid-glue-dev, sollya, libsollya-dev,
+ libdune-typetree-dev, libdune-uggrid-dev
+ removed:
+ Depends: python-pyoperators | python3-pyoperators, python3-pyviennacl,
+ ufc, python-fftw3 | python3-fftw3, python-dtcwt | python3-dtcwt,
+ python-numpy, python-ufc, libprimesieve5-dev,
+ python-pyfftw | python3-pyfftw, python-pynfft | python3-pynfft,
+ python-linop | python3-linop, libsymmetrica-dev,
+ python-pyviennacl, python-numexpr | python3-numexpr,
+ python-ferari
+ -science-mathematics
+ added:
+ Depends: sagemath-database-mutually-combinatorial-designs, flintqs,
+ rubiks, maxima-sage, planarity
+ Suggests: sagetex
+ -science-electronics
+ removed:
+ Depends: confluence
+ -science-numericalcomputation
+ added:
+ Depends: python3-numpy | python-numpy, pyzo,
+ python3-arrayfire | python-arrayfire,
+ python3-guiqwt | python-guiqwt,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi, python-pysph,
+ python3-tables | python-tables, python3-deap | python-deap,
+ python3-bitstring | python-bitstring,
+ python3-scipy | python-scipy, libppl-dev, libclsparse-dev,
+ python3-matplotlib | python-matplotlib,
+ python3-theano | python-theano, librsb-dev,
+ python3-lmfit | python-lmfit
+ Suggests: theano-doc, libcblas-dev, python3-bcolz
+ removed:
+ Depends: python-matplotlib, libcompute-dev,
+ python-lmfit | python3-lmfit, python-numpy, python-scipy,
+ python-deap, python-bitstring | python3-bitstring,
+ python-guiqwt, python-arrayfire | python3-arrayfire,
+ python-tables | python3-tables, pysph
+ -science-typesetting
+ added:
+ Depends: pandoc-citeproc, r-cran-knitr,
+ texmaker | kile | lyx | texmacs | auctex | vim-latexsuite |
+ texstudio, sagetex, pandoc
+ Suggests: r-cran-shape, r-cran-gridbase, r-cran-highr, r-cran-scatterd3
+ removed:
+ Depends: texmacs, lyx, auctex
+ Suggests: texmaker
+ -science-engineering-dev
+ added:
+ Depends: python3-pynfft | python-pynfft
+ Suggests: libgtkdatabox-dev
+ removed:
+ Depends: libfreefoam-dev, python-pynfft | python3-pynfft,
+ python-fftw3 | python3-fftw3, syfi-dev
+ Suggests: libgtkdatabox-0.9.2-0-dev
+ -science-viewing
+ added:
+ Depends: rlplot, gnuplot, solvespace
+ Suggests: r-cran-qqman, r-cran-shape
+ removed:
+ Depends: python-viper, python-matplotlib-venn | python3-matplotlib-venn,
+ gnuplot | gnuplot5
+ -science-physics-dev
+ added:
+ Depends: python3-multipletau | python-multipletau,
+ python3-pynfft | python-pynfft
+ removed:
+ Depends: python-pyfftw | python3-pyfftw, libfreefoam-dev,
+ python-pynfft | python3-pynfft, python-fftw3 | python3-fftw3,
+ python-multipletau | python3-multipletau
+ -science-dataacquisition-dev
+ added:
+ Depends: liblog4tango-dev, libsdsl-dev, libtango-dev
+ removed:
+ Depends: liblog4tango5-dev, libtango8-dev
+ -science-nanoscale-physics-dev
+ added:
+ Suggests: libcblas-dev
+ -science-geometry
+ added:
+ Suggests: rubiks
+ -science-physics
+ added:
+ Depends: pyfr
+ removed:
+ Depends: freefoam
+ -science-meteorology
+ added:
+ Depends: python3-netcdf4, python-metaconfig, python3-gsw, python3-cdo,
+ metview, python3-metaconfig, python-iapws, python3-iapws,
+ cmor-tables, cdftools, flexpart, python-gsw,
+ libeccodes-api-tools, python3-sphere, fcm, python3-drslib,
+ python3-cmor, python3-eccodes, makedepf90, libemos-bin, flextra,
+ python3-ferret, cylc, python-ferret, python-cdo
+ Suggests: geonetwork
+ removed:
+ Depends: freefoam, libgrib-api-tools, visit, geonetwork,
+ cmip5-cmor-tables
+ -science-engineering
+ added:
+ Depends: openfoam,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi, solvespace, scram
+ removed:
+ Depends: freefoam
+ -science-nanoscale-physics
+ added:
+ Depends: gnuplot, python3-lmfit | python-lmfit
+ removed:
+ Depends: python-lmfit | python3-lmfit, gnuplot | gnuplot5
+ -science-imageanalysis-dev
+ added:
+ Depends: python3-imageio | python-imageio
+ removed:
+ Depends: python-imageio
+ -science-logic
+ added:
+ Depends: z3, why3, why
+ removed:
+ Recommends: otter
+ -science-chemistry
+ added:
+ Depends: openfoam
+ removed:
+ Depends: freefoam
+ -science-meteorology-dev
+ added:
+ Depends: libeccodes-tools, libmagics++-dev, mpi-defaults-dev,
+ libeccodes-dev, libcdi-dev, libcoarrays-bin, libcoarrays-dev,
+ libaec-dev
+ Suggests: python3-coards | python-coards, libcblas-dev, udunits-bin
+ removed:
+ Depends: libfreefoam-dev, libgrib-api-tools, libgrib-api-dev
+ * New metapackages:
+ -science-astronomy
+ -science-astronomy-dev
+
+ -- Andreas Tille <tille@debian.org> Tue, 24 Jan 2017 11:05:32 +0100
debian-science (1.5) unstable; urgency=medium
diff -Nru debian-science-1.6/debian/control debian-science-1.7/debian/control
--- debian-science-1.6/debian/control 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/debian/control 2017-01-24 17:52:54.000000000 +0100
@@ -3,9 +3,8 @@
Section: science
Priority: extra
Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>
-Uploaders: Frederic Daniel Luc Lehobey <Frederic@Lehobey.net>,
- Andreas Tille <tille@debian.org>,
- Sylvestre Ledru <sylvestre@debian.org>
+Uploaders: Andreas Tille <tille@debian.org>,
+ Ole Streicher <olebole@debian.org>
Build-Depends-Indep: blends-dev (>= 0.6.15)
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/blends/projects/science.git
@@ -38,7 +37,7 @@
astro-telescopecontrol,
astro-tools,
astro-viewers,
- astro-virtualobservatory
+ astro-virtual-observatory
Description: Debian Science Astronomy transitional package
Debian-Astro is now a separate Debian Pure Blend and allows a fine-grained
control on the topics to install. To ease the transition, this package will
@@ -183,7 +182,7 @@
Package: science-biology
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: bauble,
critterding,
med-bio
@@ -204,8 +203,10 @@
Package: science-chemistry
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: avogadro,
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: adun.app,
+ apbs,
+ avogadro,
bkchem,
bodr,
chemeq,
@@ -215,7 +216,6 @@
cp2k,
drawxtl,
easychem,
- freefoam,
gabedit,
galculator,
gamgi,
@@ -228,6 +228,7 @@
gdis,
gdpc,
gelemental,
+ ghemical,
gperiodic,
gromacs | gromacs-mpich | gromacs-openmpi,
jmol,
@@ -241,6 +242,7 @@
mpqc,
mpqc-support,
openbabel,
+ openfoam,
pdb2pqr,
psi3,
pyfai,
@@ -249,15 +251,13 @@
qutemol,
rasmol,
tandem-mass,
+ v-sim,
viewmol,
xbs,
xdrawchem,
xmakemol-gl | xmakemol
-Suggests: adun.app,
- apbs,
- fdmnes,
+Suggests: fdmnes,
gdpc-examples,
- ghemical,
libegad,
libint,
molden,
@@ -266,8 +266,7 @@
python-mmtk,
python-mzml,
python-mzml-doc,
- tinker,
- v-sim
+ tinker
Description: Debian Science Chemistry packages
This metapackage will install Debian Science packages related to
Chemistry. You might also be interested in the field::chemistry
@@ -277,14 +276,16 @@
Package: science-dataacquisition
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: engauge-digitizer,
filo,
g3data,
ghkl,
jaaa,
libfreenect-dev,
+ libgetdata-tools,
netcdf-bin,
+ python-sardana,
xyscan
Suggests: comedi-source,
epics,
@@ -298,7 +299,6 @@
opendap,
plot-digitizer,
python-pytango,
- python-sardana,
python-taurus,
python-visa,
qtdmm,
@@ -316,11 +316,18 @@
Package: science-dataacquisition-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: liblog4tango-dev,
- libtango-dev
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: libgetdata-dev,
+ libgetdata-perl,
+ liblog4tango-dev,
+ libsdsl-dev,
+ libtango-dev,
+ python3-guidata | python-guidata,
+ python3-pygetdata | python-pygetdata
Suggests: libnarval1-dev,
- python-xrayutilities
+ python-xrayutilities,
+ r-cran-mi,
+ r-cran-ncdf4
Description: Debian Science data acquisition development packages
This metapackage will install Debian Science packages which are helpful
to develop applications related to data acquisition. This might be
@@ -329,7 +336,7 @@
Package: science-distributedcomputing
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: environment-modules,
globus-core,
gridengine-client,
@@ -361,7 +368,7 @@
Package: science-economics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: dynare,
gretl,
ipython,
@@ -386,17 +393,20 @@
r-cran-bayesm,
r-cran-boot,
r-cran-coda,
+ r-cran-dynlm,
r-cran-fbonds,
r-cran-fimport,
r-cran-fnonlinear,
r-cran-foreign,
r-cran-funitroots,
r-cran-hmisc,
+ r-cran-isocodes,
r-cran-kernsmooth,
r-cran-lme4,
r-cran-matrix,
r-cran-mcmcpack,
r-cran-mfilter,
+ r-cran-nleqslv,
r-cran-nlme,
r-cran-pwt,
r-cran-pwt8,
@@ -438,20 +448,22 @@
Package: science-electronics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: arachne-pnr,
arduino,
arduino-core,
avrdude,
berkeley-abc,
- confluence,
covered,
+ dfcgen-gtk,
drawtiming,
electric,
fpga-icestorm,
+ freehdl,
fritzing,
gcc-avr,
geda,
+ geda-xgsch2pcb,
gerbv,
gnucap,
gnusim8085,
@@ -460,11 +472,13 @@
graywolf,
gspiceui,
gtkwave,
+ gwave,
iverilog,
kicad,
linsmith,
magic,
oregano,
+ pcb,
qelectrotech,
qflow,
qrouter,
@@ -474,15 +488,13 @@
tkgate,
uisp,
verilator,
+ visolate,
yosys
Suggests: easyspice,
- freehdl,
geda-doc,
geda-examples,
geda-gaf,
- geda-xgsch2pcb,
ghdl,
- gwave,
herb,
kicad-doc-de,
kicad-doc-en,
@@ -495,11 +507,9 @@
ksimus,
libfeel++-dev,
ngspice,
- pcb,
qucs,
vbpp,
vbs,
- visolate,
xsmc-calc
Description: Debian Science Electronics packages
This metapackage will install Debian Science packages related to
@@ -510,8 +520,9 @@
Package: science-electrophysiology
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: libgdf-dev
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: libgdf-dev,
+ sigviewer
Suggests: aghermann,
bluespike,
chronus,
@@ -540,7 +551,6 @@
rtxi,
science-dataacquisition,
science-neuroscience-modeling,
- sigviewer,
spike,
spykeview,
stimfit,
@@ -558,15 +568,17 @@
Package: science-engineering
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: calculix-ccx,
+ calculix-cgx,
cba,
cgns-convert,
code-aster-gui,
code-saturne,
dime,
+ eficas,
+ fenics,
freecad,
- freefoam,
gerris,
getdp,
gmsh,
@@ -575,26 +587,35 @@
librecad,
libsilo-bin,
oce-draw,
+ openfoam,
+ python-admesh | python3-admesh,
+ python-dolfin,
+ python-escript | python3-escript | python-escript-mpi | python3-escript-mpi,
python-fiat,
python-openturns,
python-silo,
pythoncad,
sailcut,
+ scram,
+ solvespace,
syrthes,
tetgen,
z88
Suggests: ann-tools,
avl,
brlcad,
+ calculix-ccx-doc,
+ calculix-ccx-test,
+ calculix-cgx-examples,
code-aster,
diet-agent,
ecs,
- eficas,
feel++-apps,
logcentral,
logcentral-tools,
metis-edf,
netgen,
+ openmeca,
pycgns,
r-cran-spc,
salome-gui,
@@ -618,7 +639,7 @@
Package: science-engineering-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: code-saturne-bin,
code-saturne-include,
libalberta2-dev,
@@ -626,11 +647,11 @@
libceres-dev,
libcgns-dev,
libcoin80-dev,
+ libdeal.ii-dev,
libdime-dev,
libdxflib-dev,
libexodusii-dev,
libflann-dev,
- libfreefoam-dev,
libgetfem++-dev,
libhdf5-serial-dev,
libitpp-dev,
@@ -646,30 +667,29 @@
liboce-ocaf-dev,
liboce-visualization-dev,
libopenturns-dev,
+ libp4est-dev,
libplb-dev,
- libsis-jhdf5-java,
libslicot-dev,
libug-dev,
python-collada,
python3-pynfft | python-pynfft,
- r-cran-rnetcdf
-Suggests: calculix-ccx-doc,
- calculix-ccx-test,
- ceres-solver-doc,
- libdeal.ii-dev,
+ r-cran-rnetcdf,
+ trilinos-all-dev
+Suggests: ceres-solver-doc,
libdiet-admin2.8-dev,
libdiet-client2.8-dev,
libdiet-dagda2.8-dev,
libdiet-sed2.8-dev,
libelmer-dev,
libfeel++-dev,
- libgtkdatabox-0.9.2-0-dev,
+ libgtkdatabox-dev,
libgtkdataboxmm-dev,
libluminate-dev,
libmesh-dev,
libmetis-edf-dev,
libnetcdf-java,
libqwt-dev | libqwt5-qt4-dev,
+ libsis-jhdf5-java,
libslepc3.4.2-dev,
libtet1.4-dev,
openturns-examples,
@@ -685,7 +705,7 @@
Package: science-financial
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: r-cran-fasianoptions,
r-cran-fassets,
r-cran-fbasics,
@@ -711,7 +731,7 @@
Package: science-geography
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: avce00,
e00compr,
gdal-bin,
@@ -775,7 +795,7 @@
Package: science-geometry
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: carmetal,
geogebra-kde
Suggests: drgeo,
@@ -783,6 +803,7 @@
libgeometry-primitive-perl,
libmath-geometry-voronoi-perl,
octave-geometry,
+ rubiks,
salome-geom
Description: Debian Science geometry packages
This metapackage will install Debian Science packages related to
@@ -793,7 +814,7 @@
Package: science-highenergy-physics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: cernlib,
cernlib-base,
cernlib-core,
@@ -915,12 +936,19 @@
Package: science-highenergy-physics-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: cernlib-base-dev,
cernlib-core-dev,
fcc,
+ libclhep-dev,
+ libfastjet-dev,
+ libfastjet-fortran-dev,
+ libfastjetplugins-dev,
+ libfastjettools-dev,
liblhapdf-dev,
- libooptools-dev
+ libooptools-dev,
+ libsiscone-dev,
+ libsiscone-spherical-dev
Suggests: ckon,
clhep-doc,
fastjet-doc,
@@ -930,11 +958,6 @@
hepmc-user-manual,
herwig++-dev,
lhapdf-ccwrap-doc,
- libclhep-dev,
- libfastjet-dev,
- libfastjet-fortran-dev,
- libfastjetplugins-dev,
- libfastjettools-dev,
libhepmc-dev,
libhepmcfio-dev,
libhepmcinterface8-dev,
@@ -986,8 +1009,6 @@
libroot-tmva-dev,
libroot-tree-dev,
libroot-tree-treeplayer-dev,
- libsiscone-dev,
- libsiscone-spherical-dev,
libthepeg-dev,
pythia8-doc-html,
pythia8-doc-worksheet,
@@ -1012,13 +1033,12 @@
Package: science-imageanalysis
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: gwyddion,
teem-apps
Suggests: gpiv,
gpivtools,
limereg,
- python-imageio,
scilab-sivp
Description: Debian Science image analysis packages
This metapackage will install Debian Science packages related to
@@ -1029,17 +1049,19 @@
Package: science-imageanalysis-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: cimg-dev,
libcv-dev,
libsimage-dev,
libvigraimpex-dev,
libvlfeat-dev,
python-vigra
-Suggests: libfreeimage-dev,
+Suggests: lib3ds-dev,
+ libfreeimage-dev,
liblimereg-dev,
libvisad-java,
- python-imageio
+ python-imageio,
+ python3-imageio
Description: Debian Science development of image analysis applications
This metapackage will install Debian Science development libraries to
develop scientific image analysis applications acquisitions.
@@ -1047,41 +1069,72 @@
Package: science-linguistics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: apertium,
apertium-lex-tools,
artha,
cg3,
collatinus,
+ dimbl,
frog,
+ giella-sme,
+ hfst,
+ hfst-ospell,
libcld2-dev,
link-grammar,
+ lttoolbox,
mbt,
mbtserver,
+ python3-pynlpl | python-pynlpl,
timbl,
timblserver,
ucto,
+ uctodata,
wordnet
Suggests: apertium-af-nl,
apertium-apy,
+ apertium-arg,
+ apertium-arg-cat,
apertium-br-fr,
+ apertium-ca-it,
apertium-cat,
apertium-cy-en,
apertium-dan,
apertium-dan-nor,
apertium-en-ca,
apertium-en-es,
+ apertium-en-gl,
apertium-eo-ca,
+ apertium-eo-en,
apertium-eo-es,
+ apertium-eo-fr,
+ apertium-es-ast,
apertium-es-ca,
apertium-es-gl,
+ apertium-es-it,
apertium-es-pt,
apertium-es-ro,
+ apertium-eu-en,
apertium-eu-es,
apertium-fr-ca,
apertium-fr-es,
apertium-fra,
apertium-fra-cat,
+ apertium-hbs,
+ apertium-hbs-eng,
+ apertium-hbs-mkd,
+ apertium-hbs-slv,
+ apertium-hin,
+ apertium-id-ms,
+ apertium-is-sv,
+ apertium-isl,
+ apertium-isl-eng,
+ apertium-ita,
+ apertium-kaz,
+ apertium-kaz-tat,
+ apertium-mk-bg,
+ apertium-mk-en,
+ apertium-mlt-ara,
apertium-nno,
apertium-nno-nob,
apertium-nob,
@@ -1089,9 +1142,17 @@
apertium-oc-es,
apertium-pt-ca,
apertium-pt-gl,
+ apertium-sme-nob,
+ apertium-spa,
+ apertium-spa-arg,
+ apertium-srd,
+ apertium-srd-ita,
apertium-swe,
apertium-swe-dan,
- dimbl,
+ apertium-swe-nor,
+ apertium-tat,
+ apertium-urd,
+ apertium-urd-hin,
frogdata,
libcg3-dev,
libfolia-dev,
@@ -1103,6 +1164,11 @@
libucto1-dev,
python-timbl,
python3-nltk | python-nltk,
+ python3-snowballstemmer | python-snowballstemmer,
+ r-cran-lexrankr,
+ r-cran-nlp,
+ r-cran-snowballc,
+ r-cran-tm,
sequitur-g2p,
travatar,
wnsqlbuilder
@@ -1113,18 +1179,21 @@
Package: science-logic
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: agda,
alt-ergo,
boolector,
clasp,
coinor-cbc,
+ coinor-symphony,
coq,
+ cvc3,
depqbf,
gringo,
hol-light,
hol88,
lbt,
+ maria,
matita,
maude,
minisat+,
@@ -1137,9 +1206,9 @@
why3,
z3
Suggests: coala,
- cvc3,
+ coinor-libcoinmp-dev,
mace2,
- maria,
+ toulbar2,
why
Description: Debian Science Logic packages
This metapackage is part of the Debian Pure Blend "Debian Science"
@@ -1150,27 +1219,29 @@
Package: science-machine-learning
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: autoclass,
+ caffe-cpu,
gprolog,
libcv-dev,
libevocosm-dev,
libfann-dev,
libga-dev,
liblinear-dev,
+ libmlpack-dev,
libocas-dev,
libshark-dev,
libsvm-dev,
+ libtorch3-dev,
libvigraimpex-dev,
mcl,
octave-ga,
- pgapack,
python-genetic,
python-mdp,
python-mvpa2,
python-opencv,
+ python-pebl,
python-pyevolve,
- python-pymc,
python-scikits-learn,
python-statsmodels,
python-vigra,
@@ -1181,11 +1252,15 @@
r-cran-gbm,
r-cran-mass,
r-cran-mcmcpack,
+ r-cran-mlbench,
r-cran-mnp,
r-cran-msm,
r-cran-tgp,
- weka
+ scilab-ann,
+ weka,
+ yap
Suggests: ask,
+ caffe-cuda,
flann,
libacovea-dev,
libcomplearn-dev,
@@ -1195,43 +1270,45 @@
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
libshogun-dev,
- libtorch3-dev,
lua-torch5,
lush,
+ pgapack,
pybrain,
python-mlpy,
python-orange,
- python-pebl,
+ python-pymc,
root-system,
science-numericalcomputation,
science-statistics,
science-typesetting,
- scilab-ann,
- vowpal-wabbit,
- yap
+ torch-core-free,
+ toulbar2,
+ vowpal-wabbit
Description: Debian Science Machine Learning packages
- This metapackage will install Debian packages which might be useful for
- scientists interested in machine learning. Included packages range
- from knowledge-based (expert) inference systems to software
- implementing dominant nowadays statistical methods.
+ This metapackage will install packages useful for machine learning.
+ Included packages range from knowledge-based (expert) inference
+ systems to software implementing the advanced statistical methods
+ that currently dominate the field.
Package: science-mathematics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: 4ti2,
agda,
auto-07p,
axiom,
bliss,
+ coinor-cbc,
coinor-symphony,
coq,
- dolfin-bin,
eclib-tools,
fenics,
+ flintqs,
fplll-tools,
freefem,
freefem++,
+ freefem3d,
freemat,
frobby,
gap,
@@ -1262,6 +1339,7 @@
mathicgb,
mathomatic,
matita,
+ maxima-sage,
mcl,
minisat,
mumps-test,
@@ -1270,22 +1348,33 @@
octave,
palp,
pari-gp,
+ planarity,
polylib-utils,
proofgeneral,
prover9,
python-deap,
+ python-dolfin,
python-ffc,
python-minieigen,
python-openturns,
+ python-sagenb,
+ python-sagenb-export | python3-sagenb-export,
+ python-ufl,
qhull-bin,
qsopt-ex,
regina-normal,
rheolef,
+ rubiks,
+ sagemath,
sagemath-database-conway-polynomials,
sagemath-database-elliptic-curves,
sagemath-database-graphs,
+ sagemath-database-mutually-combinatorial-designs,
sagemath-database-polytopes,
science-statistics,
+ scilab,
+ scilab-ann,
+ scilab-plotlib,
scotch,
singular,
snappea,
@@ -1299,8 +1388,8 @@
Suggests: ann-tools,
cliquer,
eprover,
+ evolver-ogl | evolver-nox,
feel++-apps,
- freefem3d,
gap-gapdoc,
gap-io,
gap-online-help,
@@ -1314,20 +1403,15 @@
netgen-doc,
octaviz,
pari-extra,
- polybori,
- polybori-gui,
primesieve,
proofgeneral-coq,
qtoctave,
r-cran-evd,
- sagemath,
- scilab,
- scilab-ann,
- scilab-plotlib,
+ sagetex,
scilab-scimax,
scilab-sivp,
scilab-swt,
- sfc,
+ toulbar2,
xmds
Description: Debian Science Mathematics packages
This metapackage will install Debian Science packages related to
@@ -1338,9 +1422,12 @@
Package: science-mathematics-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: code-saturne-bin,
code-saturne-include,
+ coinor-libcoinmp-dev,
+ cppad,
+ fenics,
fflas-ffpack,
fftw-dev,
gap-dev,
@@ -1357,6 +1444,7 @@
libcneartree-dev,
libcqrlib2-dev,
libcvector2-dev,
+ libdeal.ii-dev,
libdogleg-dev,
libdouble-conversion-dev,
libdune-grid-dev,
@@ -1366,6 +1454,7 @@
libeinspline-dev,
libfftw3-dev,
libflann-dev,
+ libflint-arb-dev,
libfplll-dev,
libfreefem++-dev,
libfreefem-dev,
@@ -1380,9 +1469,11 @@
libiml-dev,
libitsol-dev,
libjama-dev,
+ libjgrapht0.8-java | libjgrapht0.6-java,
liblapack-dev,
liblbfgs-dev,
liblfunction-dev,
+ liblinbox-dev,
liblip-dev,
liblrcalc-dev,
libm4ri-dev,
@@ -1396,19 +1487,24 @@
libmpfrc++-dev,
libmuparser-dev,
libnauty2-dev,
+ libnewmat10-dev,
libnfft3-dev,
libopenblas-dev,
libopenturns-dev,
+ libp4est-dev,
libplb-dev,
libpynac-dev,
libqcustomplot-dev,
+ libqd-dev,
libqhull-dev,
libqsopt-ex-dev,
libquadrule-dev,
libranlip-dev,
libratpoints-dev,
+ librw-dev,
libscscp1-dev,
libscythestat-dev,
+ libsopt-dev,
libsparskit-dev,
libspooles-dev,
libstxxl-dev,
@@ -1425,6 +1521,9 @@
python-ffc,
python-openopt,
python-openturns,
+ python-petsc4py,
+ python-polybori,
+ python-slepc4py,
python-ufl,
python3-dtcwt | python-dtcwt,
python3-gimmik,
@@ -1432,40 +1531,43 @@
python3-numexpr | python-numexpr,
python3-numpy | python-numpy,
python3-pynfft | python-pynfft,
- sfftw-dev
+ sfftw-dev,
+ slepc-dev,
+ trilinos-all-dev
Suggests: cfortran,
- dolfin-dev,
fflas-ffpack-dev-doc,
fflas-ffpack-user-doc,
givaro-dev-doc,
givaro-user-doc,
+ jel-java,
jsurf-alggeo,
libblitz0-dev,
+ libcblas-dev,
libcliquer-dev,
+ libdune-functions-dev,
+ libdune-grid-glue-dev,
libdune-istl-dev,
libdune-localfunctions-dev,
+ libdune-pdelab-dev,
+ libdune-typetree-dev,
+ libdune-uggrid-dev,
libfeel++-dev,
libgsl0-dev,
libitpp-dev,
libjlapack-java,
liblevmar-dev,
- liblinbox-dev,
liblrs-dev,
libmesh-dev,
libmtj-java,
libnetlib-java,
- libnewmat10-dev,
libnglib-dev,
libntl-dev,
libparmetis-dev,
libpolybori-dev,
libpolybori-groebner-dev,
libprimesieve6-dev,
- libqd-dev,
libqrupdate-dev,
- libslepc3.4.2-dev,
libsollya-dev,
- libsopt-dev,
libsuitesparse-metis-dev,
libtachyon-dev,
libtestu01-0-dev,
@@ -1475,7 +1577,6 @@
openturns-examples,
python-cylp,
python-glpk,
- python-polybori,
python-pyoperators,
python-pyviennacl,
python3-pyoperators,
@@ -1490,29 +1591,50 @@
Package: science-meteorology
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: cdo,
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: aweather,
+ cdftools,
+ cdo,
+ cmor-tables,
+ cylc,
dballe,
ecaccess,
+ fcm,
ferret-vis,
- freefoam,
+ flexpart,
+ flextra,
grads,
libdap-bin,
libdap-doc,
- libgrib-api-tools,
+ libemos-bin,
magics++,
+ makedepf90,
+ metview,
nco,
ncview,
+ python-cdo,
python-drslib,
+ python-ferret,
python-grib,
+ python-gsw,
+ python-iapws,
+ python-metaconfig,
python-sphere,
+ python3-cdo,
+ python3-drslib,
+ python3-eccodes,
+ python3-ferret,
+ python3-gsw,
+ python3-iapws,
+ python3-metaconfig,
+ python3-netcdf4,
+ python3-sphere,
vistrails,
zygrib
-Suggests: aweather,
- cmip5-cmor-tables,
- geonetwork,
+Suggests: geonetwork,
gerris,
gnudatalanguage,
+ libeccodes-api-tools,
ncl,
octave-octcdf,
paraview,
@@ -1520,8 +1642,8 @@
python-dap,
python-netcdf,
python-openturns,
- r-base,
- visit
+ python3-cmor,
+ r-base
Description: Debian Science Meteorology packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Meteorology and Climate.
@@ -1529,25 +1651,28 @@
Package: science-meteorology-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: fftw-dev,
+ libaec-dev,
libblas-dev,
libblas-doc,
+ libcdi-dev,
+ libcoarrays-dev,
libdap-dev,
+ libeccodes-dev,
+ libeccodes-tools,
libemos-dev,
libfftw3-dev,
libfftw3-doc,
- libfreefoam-dev,
libgadap-dev,
libgctp-dev,
- libgrib-api-dev,
- libgrib-api-tools,
libgrib2c-dev,
libhdfeos-dev,
libhe5-hdfeos-dev,
liblapack-dev,
liblapack-doc,
liblas-dev,
+ libmagics++-dev,
libnetcdf-dev,
liboasis3-dev,
libopenturns-dev,
@@ -1565,10 +1690,16 @@
wcslib-doc
Suggests: gfortran,
ksh,
+ libcblas-dev,
libcmor-dev,
+ libcoarrays-bin,
libfeel++-dev,
+ mpi-defaults-dev,
openturns-examples,
- pkg-config
+ pkg-config,
+ python-coards,
+ python3-coards,
+ udunits-bin
Description: Debian Science Meteorology-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Meteorology and Climate.
@@ -1578,16 +1709,20 @@
Package: science-nanoscale-physics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: avogadro,
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: abinit,
+ avogadro,
+ cadabra,
cbflib-bin,
cp2k,
drawxtl,
etsf-io,
feynmf,
+ fityk,
garlic,
gdis,
ggobi,
+ ghemical,
gnuplot,
gpaw,
gperiodic,
@@ -1613,13 +1748,13 @@
pyxplot,
quantum-espresso,
science-numericalcomputation,
- udav
-Suggests: abinit,
- ape,
+ scilab,
+ udav,
+ v-sim
+Suggests: ape,
atompaw,
axiom,
bigdft,
- cadabra,
dx,
dx-doc,
dxsamples,
@@ -1627,9 +1762,6 @@
extrema,
fdmnes,
feel++-apps,
- fityk,
- ghemical,
- gnuplot5,
gpiv,
gpivtools,
hdf5-helpers,
@@ -1657,10 +1789,8 @@
scidavis,
science-mathematics,
science-statistics,
- scilab,
scilab-sivp,
sixpack,
- v-sim,
wannier90-1,
wannier90-2
Description: Debian Science Nanoscale Physics packages
@@ -1685,12 +1815,14 @@
Package: science-nanoscale-physics-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: gsl-bin,
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: abinit-doc,
+ gsl-bin,
libblacs-mpi-dev,
libblas-dev,
libblas-doc,
libcbf-dev,
+ libclipper-dev,
libetsf-io-dev,
libetsf-io-doc,
libfftw3-dev,
@@ -1702,20 +1834,19 @@
liboce-visualization-dev,
libopenmpi-dev | libmpich-dev,
libscalapack-mpi-dev,
- libsis-jhdf5-java,
libxc-dev,
netcdf-doc,
pyfai,
python-fabio,
r-cran-rnetcdf,
+ scalapack-doc,
science-mathematics-dev
-Suggests: abinit-doc,
- crystfel-dev,
+Suggests: crystfel-dev,
gsl-doc-info,
gsl-doc-pdf,
gsl-ref-html,
gsl-ref-psdoc,
- libclipper-dev,
+ libcblas-dev,
libfeel++-dev,
libfftw3-doc,
libgsl0-dev,
@@ -1723,13 +1854,13 @@
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
+ libsis-jhdf5-java,
libssm-dev,
oce-draw,
python-h5py,
python-netcdf,
python-xrayutilities,
root-system,
- scalapack-doc,
spglib,
wannier90-1-dev
Description: Debian Science Nanoscale Physics development packages
@@ -1743,7 +1874,7 @@
Package: science-neuroscience-cognitive
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: amide,
dicom3tools,
dicomnifti,
@@ -1751,14 +1882,14 @@
medcon,
minc-tools,
mriconvert,
+ mricron,
nifti-bin,
nifti2dicom,
praat,
+ psignifit,
python-dicom,
python-mvpa2,
python-nibabel,
- python-nipy,
- python-nipype,
python-nitime,
python-pyxnat,
python-statsmodels,
@@ -1781,12 +1912,12 @@
lipsia,
mni-autoreg,
mni-n3,
- mricron,
openmeeg-tools,
openwalnut-qt4,
- psignifit,
pysurfer,
python-dipy,
+ python-nipy,
+ python-nipype,
python-pyepl,
python-pypsignifit,
science-psychophysics,
@@ -1810,7 +1941,7 @@
Package: science-neuroscience-modeling
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: python-brian
Suggests: cnrun,
invt,
@@ -1834,10 +1965,12 @@
Package: science-numericalcomputation
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: admesh,
algotutor,
calculix-ccx,
+ calculix-cgx,
+ coinor-cbc,
coinor-clp,
coinor-symphony,
esys-particle,
@@ -1852,9 +1985,11 @@
libceres-dev,
libclblas-dev,
libclfft-dev,
+ libclsparse-dev,
libcolpack-dev,
libdune-grid-dev,
libopengm-dev,
+ libppl-dev,
libqsopt-ex-dev,
librsb-dev,
libsuitesparse-dev,
@@ -1864,28 +1999,42 @@
pdl,
python-csa,
python-demgengeo,
+ python-escript | python3-escript | python-escript-mpi | python3-escript-mpi,
python-gts,
+ python-pysph,
python-sfepy,
+ python-sparse,
python3-arrayfire | python-arrayfire,
python3-bitstring | python-bitstring,
python3-deap | python-deap,
+ python3-guiqwt | python-guiqwt,
python3-lmfit | python-lmfit,
python3-matplotlib | python-matplotlib,
python3-numpy | python-numpy,
python3-scipy | python-scipy,
python3-tables | python-tables,
+ python3-theano | python-theano,
python3-woo | python-woo,
pyzo,
qsopt-ex,
r-base,
+ scilab,
+ scilab-ann,
+ scilab-plotlib,
+ spyder,
vitables,
yade,
yorick
-Suggests: ceres-solver-doc,
+Suggests: calculix-ccx-doc,
+ calculix-ccx-test,
+ calculix-cgx-examples,
+ ceres-solver-doc,
+ coinor-libcoinmp-dev,
easea,
+ evolver-ogl | evolver-nox,
geneva,
hpcc,
- libclsparse-dev,
+ libcblas-dev,
libcneartree-dev,
libquantum-dev,
libscirenderer-java,
@@ -1896,22 +2045,29 @@
metis-edf,
octave-sundials,
octavede,
- pysph,
- python-guiqwt,
python-sciscipy,
python-scitools,
+ python3-agate,
+ python3-agate-dbf,
+ python3-agate-excel,
+ python3-agate-sql,
python3-bcolz,
- python3-guiqwt,
+ python3-dbfread,
+ python3-leather,
+ python3-sparse,
+ python3-spyder-line-profiler,
+ python3-spyder-memory-profiler,
+ python3-spyder-unittest,
qtoctave,
- scilab,
- scilab-ann,
scilab-jims,
scilab-metanet,
- scilab-plotlib,
scilab-scimax,
scilab-sivp,
scilab-swt,
- spyder
+ theano-doc,
+ toulbar2,
+ xtensor-dev,
+ xtensor-python-dev
Description: Debian Science Numerical Computation packages
This metapackage will install Debian Science packages useful for
numerical computation. The packages provide an array oriented
@@ -1922,21 +2078,23 @@
Package: science-physics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: axiom,
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: abinit | mpqc | openmx | psi3,
+ axiom,
+ cadabra,
cernlib,
cp2k,
drawxtl,
etsf-io,
feynmf,
- freefoam,
+ fityk,
geant321,
gerris,
ghkl,
gpaw,
gwyddion,
maxima,
- mpqc | openmx | psi3,
+ meshlab,
oce-draw,
openfoam,
opticalraytracer,
@@ -1948,15 +2106,15 @@
python-sympy,
quantum-espresso,
science-electronics,
- science-numericalcomputation
-Suggests: abinit,
- blzpack,
- cadabra,
+ science-numericalcomputation,
+ tessa | tessa-mpi,
+ v-sim
+Suggests: blzpack,
clhep,
espresso++,
+ evolver-ogl | evolver-nox,
fdmnes,
feel++-apps,
- fityk,
gate,
geant4,
gpiv,
@@ -1967,7 +2125,6 @@
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
- meshlab,
octaviz,
openctm-tools,
paw-demos,
@@ -1977,9 +2134,7 @@
scilab-sivp,
sixpack,
spis,
- tessa,
- tessa-mpi,
- v-sim
+ toulbar2
Description: Debian Science Physics packages
This metapackage will install Debian Science packages related to Physics.
You might also be interested in the debtag field::physics and, depending on
@@ -1988,20 +2143,24 @@
Package: science-physics-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: fftw-dev,
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: fenics,
+ fftw-dev,
libasl-dev,
+ libdeal.ii-dev,
libfftw3-dev,
- libfreefoam-dev,
libnfft3-dev,
libopenctm-dev,
+ libp4est-dev,
libplb-dev,
pyfai,
+ python-dolfin,
python-openctm,
python-quantities,
python3-multipletau | python-multipletau,
python3-pynfft | python-pynfft,
- sfftw-dev
+ sfftw-dev,
+ trilinos-all-dev
Suggests: libfeel++-dev,
libtriangle-dev,
python-xrayutilities
@@ -2014,7 +2173,7 @@
Package: science-presentation
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: pdf-presenter-console,
zathura
Suggests: latex-beamer
@@ -2025,7 +2184,7 @@
Package: science-psychophysics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: libfreenect-dev,
octave-psychtoolbox-3,
psychopy,
@@ -2057,25 +2216,20 @@
Package: science-robotics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
-Recommends: liburdfdom-tools,
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
+Recommends: gazebo7,
+ liburdfdom-tools,
morse-simulator,
octomap-tools,
octovis,
- python-rosclean,
- python-roscreate,
- python-rosmake,
- python-rosunit,
- ros-mk,
- rosbash,
- rosbuild,
- roslang
+ ros-desktop,
+ ros-desktop-full,
+ ros-perception,
+ ros-simulators
Suggests: arduino-mk,
choreonoid,
d-collide,
- gazebo5,
gnuplot,
- gnuplot5,
libcoin60-runtime,
libvtk5.4,
octave,
@@ -2091,6 +2245,7 @@
pcl,
roboop,
robot-player,
+ ros-opencv-apps,
rtai,
rtnet,
solid,
@@ -2104,11 +2259,12 @@
Package: science-robotics-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: libccd-dev,
libcomedi-dev,
libconsole-bridge-dev,
libcv-dev,
+ libgazebo7-dev,
libignition-math2-dev,
libignition-msgs-dev,
libignition-transport-dev,
@@ -2117,16 +2273,22 @@
libode-dev,
libompl-dev,
libopenigtlink-dev,
+ libpcl-dev,
+ libsdformat4-dev,
libsimbody-dev,
libslicot-dev,
liburdfdom-dev,
liburdfdom-headers-dev,
- libvisp-dev,
- python-comedilib
+ python-comedilib,
+ ros-desktop-dev,
+ ros-desktop-full-dev,
+ ros-desktop-full-lisp-dev,
+ ros-desktop-full-python-dev,
+ ros-perception-dev,
+ ros-simulators-dev
Suggests: libcnoid-dev,
- libgazebo5-dev,
libroboptim-core-dev,
- libsdformat-dev,
+ libvisp-dev,
visp-images-data
Description: Debian Robotics development packages
This metapackage is part of the Debian Pure Blend "Debian Science"
@@ -2136,24 +2298,30 @@
Package: science-simulations
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: calculix-ccx,
+ calculix-cgx,
esys-particle,
- freefoam,
+ gazebo7,
getdp,
lammps,
libceres-dev,
liggghts,
+ music-bin,
+ openfoam,
python-deap,
+ python-escript | python3-escript | python-escript-mpi | python3-escript-mpi,
+ python-pysph,
python-sfepy,
python3-woo | python-woo,
sumo,
yade
-Suggests: ceres-solver-doc,
+Suggests: calculix-ccx-doc,
+ calculix-ccx-test,
+ calculix-cgx-examples,
+ ceres-solver-doc,
fdmnes,
libopensurgsim-dev,
- music-bin,
- pysph,
radiance
Description: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
@@ -2162,7 +2330,7 @@
Package: science-social
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: opensesame
Description: Debian Science social sciences packages
This metapackage will install Debian Science packages useful for social
@@ -2171,10 +2339,13 @@
Package: science-statistics
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: apophenia-bin,
+ datamash,
ess,
littler,
+ psignifit,
+ pspp,
python-openturns,
python-pandas,
python-scipy,
@@ -2182,12 +2353,16 @@
r-cran-abind,
r-cran-acepack,
r-cran-amore,
+ r-cran-arm,
r-cran-bayesfactor,
r-cran-bayesm,
r-cran-bms,
r-cran-boot,
+ r-cran-bradleyterry2,
+ r-cran-ca,
r-cran-cairodevice,
r-cran-car,
+ r-cran-caret,
r-cran-chron,
r-cran-cluster,
r-cran-coda,
@@ -2195,6 +2370,7 @@
r-cran-coin,
r-cran-contfrac,
r-cran-conting,
+ r-cran-corpcor,
r-cran-date,
r-cran-dbi,
r-cran-deldir,
@@ -2204,6 +2380,7 @@
r-cran-effects,
r-cran-elliptic,
r-cran-energy,
+ r-cran-erm,
r-cran-estimability,
r-cran-expm,
r-cran-fastcluster,
@@ -2214,9 +2391,13 @@
r-cran-foptions,
r-cran-foreign,
r-cran-fportfolio,
+ r-cran-gam,
r-cran-gdata,
+ r-cran-geepack,
r-cran-ggplot2,
+ r-cran-glmnet,
r-cran-gmodels,
+ r-cran-goftest,
r-cran-gplots,
r-cran-gregmisc,
r-cran-gtools,
@@ -2227,6 +2408,7 @@
r-cran-kernsmooth,
r-cran-lattice,
r-cran-latticeextra,
+ r-cran-lavaan,
r-cran-lhs,
r-cran-lme4,
r-cran-lmtest,
@@ -2235,6 +2417,7 @@
r-cran-mapdata,
r-cran-mapproj,
r-cran-maps,
+ r-cran-maptree,
r-cran-mass,
r-cran-matchit,
r-cran-matrix,
@@ -2242,6 +2425,7 @@
r-cran-mgcv,
r-cran-misc3d,
r-cran-mnp,
+ r-cran-modelmetrics,
r-cran-modeltools,
r-cran-msm,
r-cran-multcomp,
@@ -2256,6 +2440,10 @@
r-cran-psy,
r-cran-qtl,
r-cran-quadprog,
+ r-cran-qvcalc,
+ r-cran-randomfieldsutils,
+ r-cran-raschsampler,
+ r-cran-rcmdr,
r-cran-relimp,
r-cran-reshape2,
r-cran-rgl,
@@ -2263,7 +2451,6 @@
r-cran-rinside,
r-cran-rmpi,
r-cran-rms,
- r-cran-rmysql,
r-cran-rodbc,
r-cran-rpart,
r-cran-rquantlib,
@@ -2271,6 +2458,7 @@
r-cran-rserve,
r-cran-rsprng,
r-cran-sandwich,
+ r-cran-sem,
r-cran-sm,
r-cran-snow,
r-cran-spam,
@@ -2292,11 +2480,11 @@
rkward
Suggests: libapophenia2-dev,
libtamuanova-dev,
- psignifit,
python-stats,
r-cran-afex,
r-cran-bbmle,
r-cran-blockmodeling,
+ r-cran-brglm,
r-cran-catools,
r-cran-ellipse,
r-cran-fastmatch,
@@ -2304,18 +2492,20 @@
r-cran-fecofin,
r-cran-futile.logger,
r-cran-futile.options,
+ r-cran-gnm,
r-cran-igraph,
r-cran-irlba,
r-cran-lambda.r,
r-cran-luminescence,
r-cran-magrittr,
r-cran-minpack.lm,
+ r-cran-mlmrev,
r-cran-nnls,
r-cran-princurve,
r-cran-r.oo,
r-cran-r.utils,
- r-cran-rcmdr,
r-cran-rggobi,
+ r-cran-rmysql,
r-cran-rngtools,
r-cran-rpvm,
r-cran-spc,
@@ -2332,7 +2522,7 @@
Package: science-typesetting
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: biber,
bibus,
bibutils,
@@ -2352,6 +2542,10 @@
mlpost,
pandoc,
pandoc-citeproc,
+ pybliographer,
+ r-cran-knitr,
+ referencer,
+ sagetex,
sketch,
texlive,
texlive-bibtex-extra,
@@ -2367,14 +2561,13 @@
libqtexengine-dev,
luasseq,
openoffice.org-dmaths,
- pybliographer,
pymarc,
quaneko,
r-cran-gridbase,
+ r-cran-highr,
r-cran-scatterd3,
r-cran-shape,
r-cran-xtable,
- referencer,
svgtoipe,
tellico,
texlive-math-extra,
@@ -2388,11 +2581,14 @@
Package: science-viewing
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: 3depict,
ctioga2,
feedgnuplot,
+ fityk,
g3data,
+ gfsview,
+ giza-dev,
gle-graphics,
gmsh,
gnudatalanguage,
@@ -2415,11 +2611,14 @@
pdl,
plotdrop,
python-gnuplot,
+ python-guiqwt,
python-pyqtgraph,
python-seaborn,
pyxplot,
qtiplot,
rlplot,
+ scidavis,
+ solvespace,
trend,
udav,
veusz,
@@ -2429,12 +2628,11 @@
circos,
circos-tools,
findimagedupes,
- fityk,
- gnuplot5,
jeuclid-mathviewer,
libcoin80-dev,
libgrits-dev,
libgtkmathview-bin,
+ libgts-bin,
libpuzzle-bin,
libqglviewer-dev,
libqglviewer2,
@@ -2445,7 +2643,6 @@
med-imaging,
pgfplots,
pgplot5,
- python-guiqwt,
python-matplotlib,
python-pivy,
python-scientific,
@@ -2456,11 +2653,11 @@
r-cran-ggplot2,
r-cran-labeling,
r-cran-plotrix,
+ r-cran-qqman,
r-cran-scales,
r-cran-scatterplot3d,
r-cran-shape,
r-cran-vioplot,
- scidavis,
tcl-vtk,
texlive-pictures,
visit,
@@ -2474,20 +2671,27 @@
Package: science-viewing-dev
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: gnudatalanguage,
inventor-dev,
libchealpix-dev,
libcoin80-dev,
libeinspline-dev,
+ libforge-dev,
+ libgl2ps-dev,
libglbinding-dev,
+ libgli-dev,
libglm-dev,
+ libglobjects-dev,
libgnuplot-iostream-dev,
libgrits-dev,
- libgtkdatabox-0.9.2-0-dev,
- libgtkdataboxmm-dev,
+ libgtkdatabox-dev,
+ libgts-dev,
libplplot-dev,
+ libqglviewer-dev-qt5 | libqglviewer-dev-qt4,
libqtexengine-dev,
+ libqwtplot3d-qt4-dev,
+ libslvs1-dev,
libsoqt4-dev,
libvtk6-dev,
libvtk6-java,
@@ -2497,10 +2701,14 @@
python-pivy,
python-plplot-qt,
python-vtk6,
- python3-matplotlib-venn | python-matplotlib-venn
-Suggests: libforge-dev,
+ python3-matplotlib-venn | python-matplotlib-venn,
+ python3-qwt | python-qwt,
+ python3-skimage,
+ python3-skimage-lib,
+ python3-vispy | python-vispy
+Suggests: libcollada-dom2.4-dp-dev,
+ libgtkdataboxmm-dev,
libqglviewer-dev,
- libqwtplot3d-qt4-dev,
libvtk-java,
libvtk5-dev,
libvtk5-qt4-dev,
@@ -2509,8 +2717,6 @@
python-scientific,
python-scitools,
python-vtk,
- python3-skimage,
- python3-skimage-lib,
tcl-vtk,
vtk-examples
Description: Debian Science development of visualisation applications
@@ -2520,15 +2726,16 @@
Package: science-workflow
Section: metapackages
Architecture: all
-Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Depends: science-tasks (= ${source:Version}), ${misc:Depends}, science-config (= ${source:Version})
Recommends: coop-computing-tools,
cwltool,
gearman,
gearman-tools,
make,
pegasus-wms,
- python-nipype,
snakemake
+Suggests: python-nipype,
+ python-toil
Description: workflow management systems useful for scientific research
This task lists some packages providing workflow management
systems useful for scientific research.
diff -Nru debian-science-1.6/debian/control.stub debian-science-1.7/debian/control.stub
--- debian-science-1.6/debian/control.stub 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/debian/control.stub 2017-01-24 17:52:54.000000000 +0100
@@ -2,9 +2,8 @@
Section: science
Priority: extra
Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>
-Uploaders: Frederic Daniel Luc Lehobey <Frederic@Lehobey.net>,
- Andreas Tille <tille@debian.org>,
- Sylvestre Ledru <sylvestre@debian.org>
+Uploaders: Andreas Tille <tille@debian.org>,
+ Ole Streicher <olebole@debian.org>
Build-Depends-Indep: blends-dev (>= 0.6.15)
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/blends/projects/science.git
@@ -37,7 +36,7 @@
astro-telescopecontrol,
astro-tools,
astro-viewers,
- astro-virtualobservatory
+ astro-virtual-observatory
Description: Debian Science Astronomy transitional package
Debian-Astro is now a separate Debian Pure Blend and allows a fine-grained
control on the topics to install. To ease the transition, this package will
diff -Nru debian-science-1.6/debian-science-tasks.desc debian-science-1.7/debian-science-tasks.desc
--- debian-science-1.6/debian-science-tasks.desc 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/debian-science-tasks.desc 2017-01-24 17:52:54.000000000 +0100
@@ -232,10 +232,10 @@
Parent: debian-science
Section: debian-science
Description: Debian Science Machine Learning packages
- This metapackage will install Debian packages which might be useful for
- scientists interested in machine learning. Included packages range
- from knowledge-based (expert) inference systems to software
- implementing dominant nowadays statistical methods.
+ This metapackage will install packages useful for machine learning.
+ Included packages range from knowledge-based (expert) inference
+ systems to software implementing the advanced statistical methods
+ that currently dominate the field.
Test-new-install: mark show
Key:
science-machine-learning
diff -Nru debian-science-1.6/dependency_data/debian-science_1.6.json debian-science-1.7/dependency_data/debian-science_1.6.json
--- debian-science-1.6/dependency_data/debian-science_1.6.json 1970-01-01 01:00:00.000000000 +0100
+++ debian-science-1.7/dependency_data/debian-science_1.6.json 2017-01-24 17:52:54.000000000 +0100
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting", "science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer", "xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit", "amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin", "python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2", "python-nipy", "python-nipype", "python-nitime", "python-dipy", "openwalnut-qt4", "nifti2dicom", "qnifti2dicom", "caret", "python-pyepl", "praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron", "itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr", "mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology": {"ignore": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python-openturns", "python-dap"], "depends": ["libemos-bin", "cdo", "nco", "dballe", "zygr
ib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "fcm", "makedepf90", "flextra", "flexpart", "magics++", "cylc", "libeccodes-api-tools", "ecaccess", "ncl", "python-cdo", "python3-cdo", "python-netcdf", "python3-netcdf4", "python-grib", "python3-eccodes", "python-drslib", "python3-drslib", "python-metaconfig", "python3-metaconfig", "python-gsw", "python3-gsw", "python-iapws", "python3-iapws", "python-cmor", "python3-cmor", "python-ferret", "python3-ferret", "python-sphere", "python3-sphere", "cmor-tables", "aweather", "libdap-bin", "libdap-doc", "vistrails"], "recommends": [], "avoid": []}, "financial": {"ignore": [], "suggests": [], "depends": ["r-cran-fasianoptions", "r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeser
ies", "r-cran-fportfolio"], "recommends": [], "avoid": []}, "robotics": {"ignore": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime", "libvtk5.4", "octave", "gnuplot"], "depends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros-desktop-full", "ros-desktop", "ros-perception", "ros-simulators", "openrtm", "openhrp", "pcl", "gazebo7", "openrave", "octomap-tools", "octovis"], "recommends": [], "avoid": []}, "robotics-dev": {"ignore": [], "suggests": ["visp-images-data"], "depends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat4-dev", "libconsole-bridge-dev", "libcomedi-dev", "python-comedilib", "libccd-dev", "libgazebo7-dev", "libsimbody-dev", "libignit
ion-transport-dev", "libignition-math2-dev", "libignition-msgs-dev", "libkido-dev", "ros-desktop-full-dev", "ros-desktop-dev", "ros-perception-dev", "ros-simulators-dev", "ros-desktop-full-python-dev", "ros-desktop-full-lisp-dev", "libpcl-dev"], "recommends": [], "avoid": []}, "highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "li
broot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-mat
h-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []}, "electrophysiology": {"ignore": [], "suggests": ["science-neuroscience-modeling", "science-dataacquisition", "spike", "klustakwik", "neurodata", "qrtailab
", "stimfit", "trellis-neuro", "relacs", "chronus", "libbiosig-dev", "nspike", "rtxi", "bluespike", "meabench", "mclust", "neo", "python-spykeutils", "python-neo", "pymeg", "libxdffileio-dev", "librtfilter-dev", "libeegdev-dev", "libmcpanel-dev", "eegview", "aghermann", "eeglab", "python-neuroshare", "patchclamp", "spykeview"], "depends": ["openelectrophy", "libgdf-dev", "sigviewer", "libdrawtk-dev"], "recommends": [], "avoid": []}, "simulations": {"ignore": [], "suggests": ["libopensurgsim-dev", "ceres-solver-doc"], "depends": ["sumo", "esys-particle", "lammps", "liggghts", "yade", "python-deap", "openfoam", "getdp", "fdmnes", "radiance", "music-bin", "calculix-ccx", "python-sfepy", "python-pysph", "python3-woo | python-woo", "libceres-dev", "gazebo7", "python-escript | python3-escript | python-escript-mpi | python3-escript-mpi"], "recommends": [], "avoid": []}, "neuroscience-datasets": {"ignore": [], "suggests": [], "depends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti", "haxby2
001-faceobject", "fsl-harvard-oxford-atlases", "fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas", "fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas", "fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas", "mclaren-rhesus-macaque-atlas", "sri24-atlas"], "recommends": [], "avoid": []}, "viewing-dev": {"ignore": [], "suggests": [], "depends": ["pdl", "gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib", "python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev", "python-gnuplot", "python-gnuplotlib", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev", "libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java", "vtk-examples", "libvtk6-dev", "libvtk6-java", "python-vtk6", "python-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-dev", "libeinspline-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt4-dev", "python-qwt3d-qt4", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "python3-matplotlib-venn | python-m
atplotlib-venn", "libplplot-dev", "python-plplot-qt", "libglm-dev", "libglbinding-dev", "libforge-dev", "libgli-dev", "libglobjects-dev", "libslvs1-dev"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["libmrmpi-dev", "python-mrjob", "libmemtailor-dev", "python3-pydap | python-pydap"], "depends": ["openstereogram", "xoscope", "python3-h5py | python-h5py", "python3-hdf5storage | python-hdf5storage", "science-workflow", "hdf-compass", "python3-pybind11 | python-pybind11"], "recommends": [], "avoid": []}, "geography": {"ignore": [], "suggests": ["googleearth-package", "sumo", "grace6"], "depends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsdrive", "gpsman", "earth3d", "openscenegraph", "thuban", "drawmap", "gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "php5-mapscript", "phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "osm2pgsql
", "josm", "josm-plugins", "merkaartor", "gosmore", "python-mapnik", "mapnik-utils", "osmpbf-bin", "imposm", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps", "r-cran-fields", "r-cran-raster", "pgadmin3", "openjump", "hydroffice.bag-tools", "python3-cartopy | python-cartopy"], "recommends": [], "avoid": []}, "linguistics": {"ignore": [], "suggests": ["libticcutils2-dev", "frogdata", "libtimbl3-dev", "libtimbl4-dev", "libtimblserver2-dev", "libmbt0-dev", "libucto1-dev", "libfolia-dev", "python-timbl", "wnsqlbuilder", "python3-nltk | python-nltk", "apertium-af-nl", "apertium-apy", "apertium-arg", "apertium-arg-cat", "apertium-br-fr", "apertium-ca-it", "apertium-cat", "apertium-cy-en", "apertium-dan", "apertium-dan-nor", "apertium-en-ca", "apertium-en-es", "apertium-en-gl", "apertium-eo-ca", "apertium-eo-en", "apertium-eo-es", "apertium-eo-fr", "apertium-es-ast", "apertium-es-ca", "apertium-es-gl", "apertium-es-it", "apertium-es-pt", "aper
tium-es-ro", "apertium-eu-en", "apertium-eu-es", "apertium-fra", "apertium-fra-cat", "apertium-fr-ca", "apertium-fr-es", "apertium-hbs", "apertium-hbs-eng", "apertium-hbs-mkd", "apertium-hbs-slv", "apertium-hin", "apertium-id-ms", "apertium-isl", "apertium-isl-eng", "apertium-is-sv", "apertium-ita", "apertium-kaz", "apertium-kaz-tat", "apertium-mk-bg", "apertium-mk-en", "apertium-mlt-ara", "apertium-nno", "apertium-nno-nob", "apertium-nob", "apertium-oc-ca", "apertium-oc-es", "apertium-pt-ca", "apertium-pt-gl", "apertium-sme-nob", "apertium-spa", "apertium-spa-arg", "apertium-srd", "apertium-srd-ita", "apertium-swe", "apertium-swe-dan", "apertium-swe-nor", "apertium-tat", "apertium-urd", "apertium-urd-hin", "libcg3-dev", "r-cran-tm"], "depends": ["wordnet", "apertium", "apertium-lex-tools", "link-grammar", "artha", "sequitur-g2p", "timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl", "frog", "collatinus", "travatar", "cg3", "libcld2-dev", "python3-pynlpl | python-pynlpl", "uc
todata", "giella-sme", "hfst", "hfst-ospell", "lttoolbox"], "recommends": [], "avoid": []}, "dataacquisition": {"ignore": [], "suggests": ["gnudatalanguage", "comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests", "gpsd", "tango-db", "tango-starter", "tango-accesscontrol", "python-pytango", "python-taurus", "hart"], "depends": ["engauge-digitizer", "qtdmm", "g3data", "ktimetrace", "netcdf-bin", "python-sardana", "jaaa", "ghkl", "narval-utils", "xyscan", "filo", "python-visa", "mx-dataacquisition", "epics", "plot-digitizer", "libfreenect-dev", "opendap"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["r-cran-spc", "r-cran-mlmrev", "science-mathematics", "libtamuanova-dev", "r-cran-blockmodeling", "r-cran-catools", "r-cran-fastmatch", "r-cran-futile.logger", "r-cran-futile.options", "r-cran-igraph", "r-cran-lambda.r", "r-cran-magrittr", "r-cran-nnls", "r-cran-r.oo", "r-cran-r.utils", "libapophenia2-dev", "r-cran-bbmle", "r-cran-ellipse
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ds": [], "avoid": []}, "nanoscale-physics-dev": {"ignore": [], "suggests": ["libcblas-dev", "libfftw3-doc", "libfeel++-dev", "oce-draw", "python-netcdf", "python-h5py"], "depends": ["abinit-doc", "libblas-dev", "libblas-doc", "liblapack-dev", "liblapack-doc", "libetsf-io-dev", "libetsf-io-doc", "libfftw3-dev", "libgsl0-dev", "gsl-bin", "gsl-doc-info", "gsl-ref-html | gsl-ref-psdoc", "libnetcdf-dev", "netcdf-doc", "r-cran-rnetcdf", "libsis-jhdf5-java", "libxc-dev", "libopenmpi-dev | libmpich-dev", "wannier90-1-dev", "liboce-visualization-dev", "liboce-ocaf-dev", "libpspio-dev", "spglib", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "python-fabio", "libcbf-dev", "pyfai", "python-xrayutilities", "crystfel-dev", "libssm-dev", "libclipper-dev"], "recommends": ["libhdf5-dev", "gsl-doc-pdf", "libblacs-mpi-dev", "libscalapack-mpi-dev", "scalapack-doc", "science-mathematics-dev"], "avoid": []}, "geometry": {"ignore": [], "suggests": ["libcgal-dev",
"libgeometry-primitive-perl", "libmath-geometry-voronoi-perl", "octave-geometry", "rubiks"], "depends": ["carmetal", "salome-geom", "drgeo", "geogebra-kde"], "recommends": [], "avoid": []}, "economics": {"ignore": [], "suggests": ["ess", "dynare-matlab", "matlab-support", "science-typesetting", "science-viewing", "science-mathematics", "science-numericalcomputation", "science-statistics", "science-social"], "depends": ["dynare", "gretl", "octave", "octave-econometrics", "octave-statistics", "octave-gsl", "octave-optim", "octave-linear-algebra", "octave-io", "octave-symbolic", "octave-dataframe", "r-base", "r-cran-urca", "r-cran-bayesm", "r-cran-coda", "r-cran-boot", "r-cran-foreign", "r-cran-kernsmooth", "r-cran-matrix", "r-cran-nlme", "r-cran-hmisc", "r-cran-tseries", "r-cran-mfilter", "r-cran-lme4", "r-cran-mcmcpack", "r-cran-quadprog", "r-cran-fbonds", "r-cran-fimport", "r-cran-fnonlinear", "r-cran-funitroots", "r-cran-wdi", "r-cran-pwt", "r-cran-pwt8", "r-cran-rsdmx", "r-cran-i
socodes", "r-cran-dynlm", "r-cran-nleqslv", "rkward", "julia", "maxima", "wxmaxima", "ipython", "python3-matplotlib | python-matplotlib", "python3-numpy | python-numpy", "python3-scipy | python-scipy", "python-scitools", "python-statsmodels", "python3-pandas | python-pandas", "python3-simpy | python-simpy", "dolo", "python-econpy", "recs", "python-quantecon", "r-cran-ecdat", "x13-arima-seats", "r-other-bmr", "minsky", "r-cran-vars", "r-other-gecon"], "recommends": [], "avoid": []}, "viewing": {"ignore": [], "suggests": ["libgrits-dev", "worldwind", "med-imaging", "libgtkmathview-bin", "jeuclid-mathviewer", "texlive-pictures", "pgplot5", "r-cran-plotrix", "r-cran-colorspace", "r-cran-labeling", "r-cran-scales", "r-cran-ggplot2", "r-cran-scatterplot3d", "r-cran-vioplot", "r-cran-shape", "r-cran-qqman", "r-cran-aplpack", "findimagedupes", "libpuzzle-bin", "python-matplotlib", "python-scitools", "circos", "circos-tools", "libqglviewer-dev", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev"
, "libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java", "vtk-examples", "python-pivy"], "depends": ["vistrails", "pdl", "gnudatalanguage", "kst", "ifrit", "yorick", "python-scientific", "fityk", "gnuplot", "grace", "gri", "labplot", "graphviz", "pyxplot", "plotdrop", "qtiplot", "python-guiqwt", "imview", "mayavi2", "g3data", "gwyddion", "paraview", "visit", "gle-graphics", "gmsh", "lybniz", "3depict", "mathgl", "udav", "matlab2tikz", "cassandra", "pgfplots", "feedgnuplot", "libgnuplot-iostream-dev", "libqglviewer2", "python-gnuplot", "ovito", "scidavis", "veusz", "ctioga2", "python-seaborn", "trend", "python-pyqtgraph", "rlplot", "solvespace"], "recommends": [], "avoid": []}, "devices": {"ignore": [], "suggests": ["libticables-dev", "libticalcs-dev", "libticonv-dev", "libtifiles-dev"], "depends": ["expeyes", "gfm", "tiemu", "tilem", "tilp2", "bossa", "bossa-cli"], "recommends": [], "avoid": []}, "nanoscale-physics": {"ignore": [], "suggests": ["hdf5-helpers", "hdf5-tools", "net
cdf-doc", "openmpi-doc | mpich-doc", "axiom", "maxima", "libgraphviz-perl", "python-pygraphviz", "dx", "dxsamples", "dx-doc", "gpiv", "gpivtools", "feel++-apps", "pymca", "qtiplot", "scidavis", "science-statistics", "science-mathematics"], "depends": ["abinit", "mpqc", "openmx", "psi3", "quantum-espresso", "drawxtl", "etsf-io", "libxc", "feynmf", "fityk", "gnuplot", "grace", "horae", "ifeffit", "sixpack", "libblas3", "liblapack3", "libfftw3-3", "libgsl0ldbl", "gsl-bin", "netcdf-bin", "openmpi-bin | mpich", "science-numericalcomputation", "avogadro", "garlic", "gdis", "ghemical", "v-sim", "gwyddion", "qtoctave", "scilab", "scilab-sivp", "cbflib-bin", "python3-lmfit | python-lmfit", "ape", "atompaw", "bigdft", "cp2k", "exciting", "gpaw", "octopus", "python-ase", "wannier90-1", "wannier90-2", "octaviz", "fdmnes", "liblevmar-2-6"], "recommends": ["nco", "ncview", "cadabra", "extrema", "ggobi", "mayavi2", "udav", "gperiodic", "python-elemental", "graphviz", "libblacs-mpi1", "libscalapack
-mpi1", "python-scientific", "python-scipy", "python-scitools", "python-sympy", "pyxplot"], "avoid": []}, "imageanalysis-dev": {"ignore": [], "suggests": ["libfreeimage-dev"], "depends": ["libcv-dev", "cimg-dev", "libsimage-dev", "libvlfeat-dev", "libvisad-java", "libvigraimpex-dev", "python-vigra", "python3-imageio | python-imageio", "liblimereg-dev"], "recommends": [], "avoid": []}, "logic": {"ignore": [], "suggests": [], "depends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral", "why", "why3", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3", "z3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona"], "recommends": [], "avoid": []}, "psychophysics": {"ignore": [], "suggests": ["science-neuroscience-cognitive", "science-bci", "visionegg", "python-pyxid", "tscope", "opensesame", "psytoolkit", "debruijn", "psychlops", "pebl"], "depends": ["psychopy", "python-pyoptical", "python-pyepl", "libfr
eenect-dev", "nrec"], "recommends": ["octave-psychtoolbox-3"], "avoid": []}, "distributedcomputing": {"ignore": [], "suggests": ["hpcc", "coop-computing-tools", "python-mpi4py", "psom", "octave-mpi"], "depends": ["ipython", "torque-common", "torque-server", "nordugrid-arc-nox", "gridengine-client", "gridengine-exec", "gridengine-master", "gridengine-qmon", "globus-core", "openmpi-bin", "mpich", "openmpipython", "mpich2python", "python-mpi", "htcondor", "dmtcp", "environment-modules", "python-scoop"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "science-statistics", "science-mathematics", "scilab-sivp", "openctm-tools", "feel++-apps"], "depends": ["cernlib", "geant321", "paw++", "paw", "gpaw", "clhep", "geant4", "abinit | mpqc | openmx | psi3", "gerris", "feynmf", "openfoam", "fityk", "horae", "ifeffit", "sixpack", "tessa | tessa-mpi", "science-numericalcomputation", "oce-draw", "science-electronics", "v-sim", "gpiv", "gpivtools", "maxima", "py
thon-sympy", "axiom", "meshlab", "cadabra", "drawxtl", "opticalraytracer", "ghkl", "python-deap", "etsf-io", "pymca", "quantum-espresso", "gwyddion", "blzpack", "gate", "openfoam", "jfreemesh", "spis", "espresso++", "cp2k", "octaviz", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "fdmnes", "pyfr"], "recommends": [], "avoid": []}, "meteorology-dev": {"ignore": [], "suggests": ["udunits-bin", "libcblas-dev", "gfortran", "ksh", "pkg-config", "openturns-examples", "libfeel++-dev", "python3-coards | python-coards"], "depends": ["libemos-dev", "mpi-defaults-dev", "libcoarrays-dev", "libcoarrays-bin", "libgadap-dev", "libcmor-dev", "libcdi-dev", "libeccodes-dev", "libeccodes-tools", "libgrib2c-dev", "libhe5-hdfeos-dev", "libhdfeos-dev", "libproj-dev", "libgctp-dev", "libnetcdf-dev", "netcdf-bin", "r-cran-rnetcdf", "liblapack-dev", "libblas-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "libblas-doc", "liblapack-doc", "libfftw3-doc", "liblas-dev",
"libsphere-dev", "libterralib-dev", "libmagics++-dev", "libaec-dev", "liboasis3-dev", "libudunits2-dev", "libdap-dev", "python-openturns", "libopenturns-dev", "wcslib-dev", "wcslib-doc", "librsl-dev", "libwreport-dev"], "recommends": [], "avoid": []}, "social": {"ignore": [], "suggests": [], "depends": ["opensesame"], "recommends": [], "avoid": []}}
\ Kein Zeilenumbruch am Dateiende.
diff -Nru debian-science-1.6/dependency_data/debian-science_1.7.json debian-science-1.7/dependency_data/debian-science_1.7.json
--- debian-science-1.6/dependency_data/debian-science_1.7.json 1970-01-01 01:00:00.000000000 +0100
+++ debian-science-1.7/dependency_data/debian-science_1.7.json 2017-01-24 17:52:54.000000000 +0100
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting", "science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer", "xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit", "amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin", "python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2", "python-nipy", "python-nipype", "python-nitime", "python-dipy", "openwalnut-qt4", "nifti2dicom", "qnifti2dicom", "caret", "python-pyepl", "praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron", "itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr", "mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology": {"ignore": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python-openturns", "python-dap"], "depends": ["libemos-bin", "cdo", "nco", "dballe", "zygr
ib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "fcm", "makedepf90", "flextra", "flexpart", "magics++", "cylc", "libeccodes-api-tools", "ecaccess", "ncl", "python-cdo", "python3-cdo", "python-netcdf", "python3-netcdf4", "python-grib", "python3-eccodes", "python-drslib", "python3-drslib", "python-metaconfig", "python3-metaconfig", "python-gsw", "python3-gsw", "python-iapws", "python3-iapws", "python-cmor", "python3-cmor", "python-ferret", "python3-ferret", "python-sphere", "python3-sphere", "cmor-tables", "aweather", "libdap-bin", "libdap-doc", "vistrails"], "recommends": [], "avoid": []}, "viewing-dev": {"ignore": [], "suggests": ["libcollada-dom2.4-dp-dev"], "depends": ["pdl", "gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib", "python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev", "python-gnuplot", "python-gnuplotlib", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev", "libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java", "vtk-exa
mples", "libvtk6-dev", "libvtk6-java", "python-vtk6", "python-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-dev", "libeinspline-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt4-dev", "python-qwt3d-qt4", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "python3-matplotlib-venn | python-matplotlib-venn", "libplplot-dev", "python-plplot-qt", "libglm-dev", "libglbinding-dev", "libforge-dev", "libgli-dev", "libglobjects-dev", "libslvs1-dev", "libgts-dev", "python3-vispy | python-vispy", "libgl2ps-dev", "libqglviewer-dev-qt5 | libqglviewer-dev-qt4", "python3-qwt | python-qwt"], "recommends": [], "avoid": []}, "robotics": {"ignore": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime", "libvtk5.4", "octave", "gnuplot"], "depends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros-desktop-full", "ros-d
esktop", "ros-perception", "ros-simulators", "ros-opencv-apps", "openrtm", "openhrp", "pcl", "gazebo7", "openrave", "octomap-tools", "octovis"], "recommends": [], "avoid": []}, "robotics-dev": {"ignore": [], "suggests": ["visp-images-data"], "depends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat4-dev", "libconsole-bridge-dev", "libcomedi-dev", "python-comedilib", "libccd-dev", "libgazebo7-dev", "libsimbody-dev", "libignition-transport-dev", "libignition-math2-dev", "libignition-msgs-dev", "libkido-dev", "ros-desktop-full-dev", "ros-desktop-dev", "ros-perception-dev", "ros-simulators-dev", "ros-desktop-full-python-dev", "ros-desktop-full-lisp-dev", "libpcl-dev"], "recommends": [], "avoid": []}, "highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "
depends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math
-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "
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dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "libopenctm-dev", "python-openctm", "python-quantities", "python3-multipletau | python-multipletau", "python3-pynfft | python-pynfft", "libfeel++-dev", "python-xrayutilities", "libplb-dev", "libasl-dev", "trilinos-all-dev", "libdeal.ii-dev", "libp4est-dev", "fenics", "python-dolfin"], "recommends": [], "avoid": []}, "distributedcomputing": {"ignore": [], "suggests": ["hpcc", "coop-computing-tools", "python-mpi4py", "psom", "octave-mpi"], "depends": ["ipython", "torque-common", "torque-server", "nordugrid-arc-nox", "gridengine-client", "gridengine-exec", "gridengine-master", "gridengine-qmon", "globus-core", "openmpi-bin", "mpich", "openmpipython", "mpich2python", "python-mpi", "htcondor", "dmtcp", "environment-modules", "python-scoop"], "recommends": [], "avoid": []}, "dataacquisition-dev": {"ignore": [], "suggests": ["r-cran-ncdf4", "r-cran-mi"], "depends": ["libnarval1-dev", "libtango-dev", "liblog4tango-dev", "python-xrayutilities",
"libsdsl-dev", "libgetdata-dev", "python3-pygetdata | python-pygetdata", "libgetdata-perl", "python3-guidata | python-guidata"], "recommends": [], "avoid": []}, "bci": {"ignore": [], "suggests": ["pyff", "pybci", "bcpy2000", "bci2000", "emokit", "openvibe"], "depends": [], "recommends": [], "avoid": []}, "nanoscale-physics-dev": {"ignore": [], "suggests": ["libcblas-dev", "libfftw3-doc", "libfeel++-dev", "oce-draw", "python-netcdf", "python-h5py"], "depends": ["abinit-doc", "libblas-dev", "libblas-doc", "liblapack-dev", "liblapack-doc", "libetsf-io-dev", "libetsf-io-doc", "libfftw3-dev", "libgsl0-dev", "gsl-bin", "gsl-doc-info", "gsl-ref-html | gsl-ref-psdoc", "libnetcdf-dev", "netcdf-doc", "r-cran-rnetcdf", "libsis-jhdf5-java", "libxc-dev", "libopenmpi-dev | libmpich-dev", "wannier90-1-dev", "liboce-visualization-dev", "liboce-ocaf-dev", "libpspio-dev", "spglib", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "python-fabio", "libcbf-dev", "
pyfai", "python-xrayutilities", "crystfel-dev", "libssm-dev", "libclipper-dev"], "recommends": ["libhdf5-dev", "gsl-doc-pdf", "libblacs-mpi-dev", "libscalapack-mpi-dev", "scalapack-doc", "science-mathematics-dev"], "avoid": []}, "geometry": {"ignore": [], "suggests": ["libcgal-dev", "libgeometry-primitive-perl", "libmath-geometry-voronoi-perl", "octave-geometry", "rubiks"], "depends": ["carmetal", "salome-geom", "drgeo", "geogebra-kde"], "recommends": [], "avoid": []}, "economics": {"ignore": [], "suggests": ["ess", "dynare-matlab", "matlab-support", "science-typesetting", "science-viewing", "science-mathematics", "science-numericalcomputation", "science-statistics", "science-social"], "depends": ["dynare", "gretl", "octave", "octave-econometrics", "octave-statistics", "octave-gsl", "octave-optim", "octave-linear-algebra", "octave-io", "octave-symbolic", "octave-dataframe", "r-base", "r-cran-urca", "r-cran-bayesm", "r-cran-coda", "r-cran-boot", "r-cran-foreign", "r-cran-kernsmooth",
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ike", "rtxi", "bluespike", "meabench", "mclust", "neo", "python-spykeutils", "python-neo", "pymeg", "libxdffileio-dev", "librtfilter-dev", "libeegdev-dev", "libmcpanel-dev", "eegview", "aghermann", "eeglab", "python-neuroshare", "patchclamp", "spykeview"], "depends": ["openelectrophy", "libgdf-dev", "sigviewer", "libdrawtk-dev"], "recommends": [], "avoid": []}, "devices": {"ignore": [], "suggests": ["libticables-dev", "libticalcs-dev", "libticonv-dev", "libtifiles-dev"], "depends": ["expeyes", "gfm", "tiemu", "tilem", "tilp2", "bossa", "bossa-cli"], "recommends": [], "avoid": []}, "nanoscale-physics": {"ignore": [], "suggests": ["hdf5-helpers", "hdf5-tools", "netcdf-doc", "openmpi-doc | mpich-doc", "axiom", "maxima", "libgraphviz-perl", "python-pygraphviz", "dx", "dxsamples", "dx-doc", "gpiv", "gpivtools", "feel++-apps", "pymca", "qtiplot", "scidavis", "science-statistics", "science-mathematics"], "depends": ["abinit", "mpqc", "openmx", "psi3", "quantum-espresso", "drawxtl", "etsf-i
o", "libxc", "feynmf", "fityk", "gnuplot", "grace", "horae", "ifeffit", "sixpack", "libblas3", "liblapack3", "libfftw3-3", "libgsl0ldbl", "gsl-bin", "netcdf-bin", "openmpi-bin | mpich", "science-numericalcomputation", "avogadro", "garlic", "gdis", "ghemical", "v-sim", "gwyddion", "qtoctave", "scilab", "scilab-sivp", "cbflib-bin", "python3-lmfit | python-lmfit", "ape", "atompaw", "bigdft", "cp2k", "exciting", "gpaw", "octopus", "python-ase", "wannier90-1", "wannier90-2", "octaviz", "fdmnes", "liblevmar-2-6"], "recommends": ["nco", "ncview", "cadabra", "extrema", "ggobi", "mayavi2", "udav", "gperiodic", "python-elemental", "graphviz", "libblacs-mpi1", "libscalapack-mpi1", "python-scientific", "python-scipy", "python-scitools", "python-sympy", "pyxplot"], "avoid": []}, "imageanalysis-dev": {"ignore": [], "suggests": ["libfreeimage-dev", "lib3ds-dev"], "depends": ["libcv-dev", "cimg-dev", "libsimage-dev", "libvlfeat-dev", "libvisad-java", "libvigraimpex-dev", "python-vigra", "python3-im
ageio | python-imageio", "liblimereg-dev"], "recommends": [], "avoid": []}, "social": {"ignore": [], "suggests": [], "depends": ["opensesame"], "recommends": [], "avoid": []}, "psychophysics": {"ignore": [], "suggests": ["science-neuroscience-cognitive", "science-bci", "visionegg", "python-pyxid", "tscope", "opensesame", "psytoolkit", "debruijn", "psychlops", "pebl"], "depends": ["psychopy", "python-pyoptical", "python-pyepl", "libfreenect-dev", "nrec"], "recommends": ["octave-psychtoolbox-3"], "avoid": []}, "chemistry": {"ignore": [], "suggests": ["gdpc-examples", "python-mzml-doc"], "depends": ["apbs", "bkchem", "bodr", "libcdk-java", "chemeq", "chemical-mime-data", "chemtool", "easychem", "gabedit", "galculator", "garlic", "gausssum", "gchempaint", "gdis", "ghemical", "gcrystal", "gcu-bin", "gcu-plugin", "gperiodic", "gromacs | gromacs-mpich | gromacs-openmpi", "kalzium", "katomic", "mopac7-bin", "mpqc", "mpqc-support", "openbabel", "python-openbabel", "psi3", "pymol", "viewmol",
"xdrawchem", "xmakemol-gl | xmakemol", "v-sim", "rasmol", "adun.app", "gdpc", "xbs", "gelemental", "avogadro", "gamgi", "massxpert", "drawxtl", "chemical-structures", "openfoam", "pyfai", "python-mmtk", "libegad", "libint", "molden", "molekel", "tinker", "jmol", "qutemol", "cp2k", "pdb2pqr", "mmass", "mmass-modules", "python-mzml", "tandem-mass", "openchrom", "fdmnes"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "science-statistics", "science-mathematics", "scilab-sivp", "openctm-tools", "feel++-apps", "evolver-ogl | evolver-nox"], "depends": ["cernlib", "geant321", "paw++", "paw", "gpaw", "clhep", "geant4", "abinit | mpqc | openmx | psi3", "gerris", "feynmf", "openfoam", "fityk", "horae", "ifeffit", "sixpack", "tessa | tessa-mpi", "science-numericalcomputation", "oce-draw", "science-electronics", "v-sim", "gpiv", "gpivtools", "maxima", "python-sympy", "axiom", "meshlab", "cadabra", "drawxtl", "opticalraytracer", "ghkl", "python-deap", "etsf
-io", "pymca", "quantum-espresso", "gwyddion", "blzpack", "gate", "openfoam", "jfreemesh", "spis", "espresso++", "cp2k", "octaviz", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "fdmnes", "pyfr", "toulbar2"], "recommends": [], "avoid": []}, "meteorology-dev": {"ignore": [], "suggests": ["udunits-bin", "libcblas-dev", "gfortran", "ksh", "pkg-config", "openturns-examples", "libfeel++-dev", "python3-coards | python-coards"], "depends": ["libemos-dev", "mpi-defaults-dev", "libcoarrays-dev", "libcoarrays-bin", "libgadap-dev", "libcmor-dev", "libcdi-dev", "libeccodes-dev", "libeccodes-tools", "libgrib2c-dev", "libhe5-hdfeos-dev", "libhdfeos-dev", "libproj-dev", "libgctp-dev", "libnetcdf-dev", "netcdf-bin", "r-cran-rnetcdf", "liblapack-dev", "libblas-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "libblas-doc", "liblapack-doc", "libfftw3-doc", "liblas-dev", "libsphere-dev", "libterralib-dev", "libmagics++-dev", "libaec-dev", "liboasis3-dev", "libu
dunits2-dev", "libdap-dev", "python-openturns", "libopenturns-dev", "wcslib-dev", "wcslib-doc", "librsl-dev", "libwreport-dev"], "recommends": [], "avoid": []}}
\ Kein Zeilenumbruch am Dateiende.
diff -Nru debian-science-1.6/tasks/chemistry debian-science-1.7/tasks/chemistry
--- debian-science-1.6/tasks/chemistry 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/chemistry 2017-01-24 17:52:54.000000000 +0100
@@ -21,7 +21,6 @@
Why: from the DebianScience/Chemistry wiki page
Depends: rasmol
-Registration: http://www.rasmol.org/register.shtml
Depends: adun.app
Why: 3D viewer and calculation output visualisation
@@ -44,7 +43,7 @@
Depends: chemical-structures
-Depends: freefoam
+Depends: openfoam
Depends: pyfai
diff -Nru debian-science-1.6/tasks/dataacquisition debian-science-1.7/tasks/dataacquisition
--- debian-science-1.6/tasks/dataacquisition 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/dataacquisition 2017-01-24 17:52:54.000000000 +0100
@@ -29,6 +29,8 @@
Depends: python-sardana
+Depends: libgetdata-tools
+
Suggests: linux-image-2.6-rt
Responsible: kernel@pengutronix.de
Homepage: http://www.pengutronix.de/software/linux-rt/debian_en.html
diff -Nru debian-science-1.6/tasks/dataacquisition-dev debian-science-1.7/tasks/dataacquisition-dev
--- debian-science-1.6/tasks/dataacquisition-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/dataacquisition-dev 2017-01-24 17:52:54.000000000 +0100
@@ -11,3 +11,10 @@
Depends: python-xrayutilities
+Depends: libsdsl-dev
+
+Depends: libgetdata-dev, python3-pygetdata | python-pygetdata, libgetdata-perl
+
+Suggests: r-cran-ncdf4, r-cran-mi
+
+Depends: python3-guidata | python-guidata
diff -Nru debian-science-1.6/tasks/economics debian-science-1.7/tasks/economics
--- debian-science-1.6/tasks/economics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/economics 2017-01-24 17:52:54.000000000 +0100
@@ -76,6 +76,12 @@
Depends: r-cran-rsdmx
+Depends: r-cran-isocodes
+
+Depends: r-cran-dynlm
+
+Depends: r-cran-nleqslv
+
Depends: rkward
Depends: julia
diff -Nru debian-science-1.6/tasks/electronics debian-science-1.7/tasks/electronics
--- debian-science-1.6/tasks/electronics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/electronics 2017-01-24 17:52:54.000000000 +0100
@@ -41,8 +41,6 @@
Depends: linsmith, xsmc-calc
Why: Smith charts
-Depends: confluence
-
Depends: ngspice, gspiceui, easyspice
Depends: gnucap
@@ -76,6 +74,8 @@
Depends: fpga-icestorm, arachne-pnr
+Depends: dfcgen-gtk
+
Depends: vbpp
Pkg-URL: http://snapshot.debian.org/package/vbpp/
Homepage: http://www.flex.com/~jching/
diff -Nru debian-science-1.6/tasks/engineering debian-science-1.7/tasks/engineering
--- debian-science-1.6/tasks/engineering 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/engineering 2017-01-24 17:52:54.000000000 +0100
@@ -49,13 +49,16 @@
Depends: cba
+Depends: fenics, python-dolfin
+Why: Automated Solution of Partial Differential Equations
+
Depends: python-fiat
Suggests: r-cran-spc
Depends: syrthes
-Depends: freefoam
+Depends: openfoam
Depends: brlcad
@@ -143,3 +146,22 @@
Depends: libadios-bin
Depends: calculix-ccx
+
+Suggests: calculix-ccx-doc, calculix-ccx-test
+
+Depends: calculix-cgx
+
+Suggests: calculix-cgx-examples
+
+Depends: scram
+WNPP: 842766
+
+Depends: python-escript | python3-escript | python-escript-mpi | python3-escript-mpi
+Why: programming tool for implementing mathematical models in Python using the finite element method (FEM)
+
+Depends: solvespace
+Why: parametric 2d/3d CAD program
+
+Depends: openmeca
+
+Depends: python-admesh | python3-admesh
diff -Nru debian-science-1.6/tasks/engineering-dev debian-science-1.7/tasks/engineering-dev
--- debian-science-1.6/tasks/engineering-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/engineering-dev 2017-01-24 17:52:54.000000000 +0100
@@ -14,16 +14,12 @@
Depends: libitpp-dev
-Depends: libfreefoam-dev
-
Depends: libexodusii-dev
Depends: libadios-dev, libbox-dev, libsilo-dev, libxdmf-dev
Why: I/O format libraries used by various codes. Write in these formats for visualizartion
systems such as VisIt, Paraview to work.
-Suggests: libgtkdatabox-0.9.2-0-dev
-Comment: We have to find a way to make sure that version number changes in the
- library will be regarded effectively in the metapackages.
+Suggests: libgtkdatabox-dev
Suggests: libgtkdataboxmm-dev
@@ -97,8 +93,12 @@
Depends: libplb-dev
-Suggests: calculix-ccx-doc, calculix-ccx-test
-
Depends: libceres-dev
Suggests: ceres-solver-doc
+
+Depends: trilinos-all-dev
+
+Depends: libdeal.ii-dev
+
+Depends: libp4est-dev
diff -Nru debian-science-1.6/tasks/geometry debian-science-1.7/tasks/geometry
--- debian-science-1.6/tasks/geometry 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/geometry 2017-01-24 17:52:54.000000000 +0100
@@ -22,3 +22,4 @@
Suggests: octave-geometry
+Suggests: rubiks
diff -Nru debian-science-1.6/tasks/imageanalysis debian-science-1.7/tasks/imageanalysis
--- debian-science-1.6/tasks/imageanalysis 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/imageanalysis 2017-01-24 17:52:54.000000000 +0100
@@ -16,7 +16,5 @@
Depends: teem-apps
-Depends: python-imageio
-
Depends: limereg
WNPP: 777000
diff -Nru debian-science-1.6/tasks/imageanalysis-dev debian-science-1.7/tasks/imageanalysis-dev
--- debian-science-1.6/tasks/imageanalysis-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/imageanalysis-dev 2017-01-24 17:52:54.000000000 +0100
@@ -16,9 +16,11 @@
Depends: libvigraimpex-dev, python-vigra
-Depends: python-imageio
+Depends: python3-imageio | python-imageio
Depends: liblimereg-dev
WNPP: 777000
Suggests: libfreeimage-dev
+
+Suggests: lib3ds-dev
diff -Nru debian-science-1.6/tasks/linguistics debian-science-1.7/tasks/linguistics
--- debian-science-1.6/tasks/linguistics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/linguistics 2017-01-24 17:52:54.000000000 +0100
@@ -57,24 +57,48 @@
Suggests: apertium-af-nl,
apertium-apy,
+ apertium-arg,
+ apertium-arg-cat,
apertium-br-fr,
+ apertium-ca-it,
apertium-cat,
apertium-cy-en,
apertium-dan,
apertium-dan-nor,
apertium-en-ca,
apertium-en-es,
+ apertium-en-gl,
apertium-eo-ca,
+ apertium-eo-en,
apertium-eo-es,
+ apertium-eo-fr,
+ apertium-es-ast,
apertium-es-ca,
apertium-es-gl,
+ apertium-es-it,
apertium-es-pt,
apertium-es-ro,
+ apertium-eu-en,
apertium-eu-es,
apertium-fra,
apertium-fra-cat,
apertium-fr-ca,
apertium-fr-es,
+ apertium-hbs,
+ apertium-hbs-eng,
+ apertium-hbs-mkd,
+ apertium-hbs-slv,
+ apertium-hin,
+ apertium-id-ms,
+ apertium-isl,
+ apertium-isl-eng,
+ apertium-is-sv,
+ apertium-ita,
+ apertium-kaz,
+ apertium-kaz-tat,
+ apertium-mk-bg,
+ apertium-mk-en,
+ apertium-mlt-ara,
apertium-nno,
apertium-nno-nob,
apertium-nob,
@@ -82,11 +106,34 @@
apertium-oc-es,
apertium-pt-ca,
apertium-pt-gl,
+ apertium-sme-nob,
+ apertium-spa,
+ apertium-spa-arg,
+ apertium-srd,
+ apertium-srd-ita,
apertium-swe,
- apertium-swe-dan
+ apertium-swe-dan,
+ apertium-swe-nor,
+ apertium-tat,
+ apertium-urd,
+ apertium-urd-hin
Depends: cg3
Suggests: libcg3-dev
Depends: libcld2-dev
+
+Suggests: r-cran-nlp, r-cran-tm
+
+Depends: python3-pynlpl | python-pynlpl
+
+Depends: uctodata
+
+Depends: giella-sme
+
+Depends: hfst, hfst-ospell, lttoolbox
+
+Suggests: python3-snowballstemmer | python-snowballstemmer
+
+Depends: r-cran-snowballc, r-cran-lexrankr
diff -Nru debian-science-1.6/tasks/logic debian-science-1.7/tasks/logic
--- debian-science-1.6/tasks/logic 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/logic 2017-01-24 17:52:54.000000000 +0100
@@ -53,7 +53,9 @@
X-End-Category: first-order and equational solvers
X-Begin-Category: integer programming solvers
-Depends: coinor-cbc
+Depends: coinor-cbc, coinor-symphony
+
+Suggests: coinor-libcoinmp-dev
Depends: minisat+
X-Comment: minisat2 is only a transitional package
@@ -74,3 +76,5 @@
Depends: mona
X-End-Category: reasoning about automata
+
+Depends: toulbar2
diff -Nru debian-science-1.6/tasks/machine-learning debian-science-1.7/tasks/machine-learning
--- debian-science-1.6/tasks/machine-learning 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/machine-learning 2017-01-24 17:52:54.000000000 +0100
@@ -1,10 +1,10 @@
Task: Machine Learning
Install: true
Description: Debian Science Machine Learning packages
- This metapackage will install Debian packages which might be useful for
- scientists interested in machine learning. Included packages range
- from knowledge-based (expert) inference systems to software
- implementing dominant nowadays statistical methods.
+ This metapackage will install packages useful for machine learning.
+ Included packages range from knowledge-based (expert) inference
+ systems to software implementing the advanced statistical methods
+ that currently dominate the field.
Depends: gprolog, yap
Comment: Prolog (and alike) systems for inductive reasoning
@@ -143,3 +143,13 @@
Suggests: ask
Suggests: libdlib-dev
+
+Depends: r-cran-mlbench
+
+Depends: caffe-cpu | caffe-cuda
+
+Depends: torch-core-free
+
+Depends: libmlpack-dev
+
+Depends: toulbar2
diff -Nru debian-science-1.6/tasks/mathematics debian-science-1.7/tasks/mathematics
--- debian-science-1.6/tasks/mathematics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/mathematics 2017-01-24 17:52:54.000000000 +0100
@@ -86,11 +86,11 @@
Suggests: r-cran-evd
-Depends: dolfin-bin
+Depends: fenics, python-dolfin
+Why: Automated Solution of Partial Differential Equations
-Depends: fenics, sfc
-
-Depends: python-ffc
+Depends: python-ffc, python-ufl
+Why: compiler for finite element variational forms
Depends: kseg
@@ -116,14 +116,20 @@
Depends: mcl
-Depends: polybori-gui, polybori
-Why: Sage dependency
+Depends: sagemath
+
+Depends: maxima-sage
Depends: sagemath-database-conway-polynomials,
sagemath-database-elliptic-curves,
sagemath-database-graphs,
+ sagemath-database-mutually-combinatorial-designs,
sagemath-database-polytopes
+Recommends: python-sagenb, python-sagenb-export | python3-sagenb-export
+
+Suggests: sagetex
+
Depends: eclib-tools,
gfan,
lcalc,
@@ -155,6 +161,10 @@
Depends: geneagrapher
+Depends: planarity, flintqs
+
+Depends: rubiks
+
X-Removed: Packages removed from Debian
Depends: octaviz
@@ -173,15 +183,6 @@
.
Reasons are given here: http://bugs.debian.org/535537
-Depends: sagemath
-Pkg-URL: http://snapshot.debian.org/package/sagemath/
-Remark: Removed from Debian
- This package was removed from Debian for the reasons given here:
- http://bugs.debian.org/573538
- .
- We are working on including Sage in Debian once again and looking for
- help, see https://wiki.debian.org/DebianScience/Sage
-
Depends: eprover
Pkg-URL: http://snapshot.debian.org/package/eprover/1.0.004-1/
Remark: Removed from Debian
@@ -192,7 +193,7 @@
Depends: python-minieigen
-Depends: coinor-symphony
+Depends: coinor-symphony, coinor-cbc
Depends: tetgen
@@ -208,3 +209,7 @@
Suggests: gmp-ecm
Suggests: primesieve
+
+Suggests: evolver-ogl | evolver-nox
+
+Depends: toulbar2
diff -Nru debian-science-1.6/tasks/mathematics-dev debian-science-1.7/tasks/mathematics-dev
--- debian-science-1.6/tasks/mathematics-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/mathematics-dev 2017-01-24 17:52:54.000000000 +0100
@@ -25,6 +25,8 @@
Suggests: libjlapack-java, libmtj-java, libnetlib-java
+Suggests: libcblas-dev
+
Depends: libsuperlu-dev
Why: solver
@@ -72,12 +74,25 @@
Depends: libmadlib-dev, libtet1.4-dev
Why: Mesh adaptation
-Depends: dolfin-dev, python-dolfin
+Depends: fenics, python-dolfin
+Why: Automated Solution of Partial Differential Equations
+
+Depends: python-ffc, python-ufl
+Why: compiler for finite element variational forms
+
+Depends: petsc-dev
+Why: Portable Extensible Toolkit for Scientific Computation
+
+Depends: slepc-dev
+Why: Scalable Library for Eigenvalue Problem Computations
-Depends: libslepc3.4.2-dev
-Why: Generalized and standard eigenvalue solver framework
+Depends: python-petsc4py
+Why: Python interface to PETSc
-Depends: petsc-dev, libtrilinos-dev
+Depends: python-slepc4py
+Why: Python interface to SLEPc
+
+Suggests: libtrilinos-dev
Suggests: libqrupdate-dev
@@ -109,10 +124,6 @@
Depends: libparmetis-dev
-Depends: python-ffc
-
-Depends: python-ufl
-
Depends: libscythestat-dev
Depends: libfreefem++-dev, libfreefem-dev
@@ -198,7 +209,13 @@
of libdune-grid-dev so there is no point in explicitly putting them
into the tasks file - these are excluded from the sanity check procedure
-Suggests: libdune-istl-dev, libdune-localfunctions-dev
+Suggests: libdune-istl-dev,
+ libdune-localfunctions-dev,
+ libdune-functions-dev,
+ libdune-grid-glue-dev,
+ libdune-pdelab-dev,
+ libdune-typetree-dev,
+ libdune-uggrid-dev
Depends: libann-dev, libflann-dev
@@ -228,3 +245,19 @@
WNPP: 832659
Depends: python3-gimmik
+
+Depends: cppad
+
+Depends: libflint-arb-dev, librw-dev
+
+Depends: trilinos-all-dev
+
+Depends: libdeal.ii-dev
+
+Depends: libp4est-dev
+
+Depends: coinor-libcoinmp-dev
+
+Depends: jel-java
+
+Depends: libjgrapht0.8-java | libjgrapht0.6-java
diff -Nru debian-science-1.6/tasks/meteorology debian-science-1.7/tasks/meteorology
--- debian-science-1.6/tasks/meteorology 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/meteorology 2017-01-24 17:52:54.000000000 +0100
@@ -4,6 +4,9 @@
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Meteorology and Climate.
+Depends: libemos-bin
+Why: Interpolation tool for ECMWF software
+
Depends: cdo
Why: Widely-used File format manipulation utility
@@ -14,6 +17,8 @@
Depends: zygrib
Why: Used as default tool for viewing GRIB files.
+Depends: metview
+
Depends: ncview
Depends: grads
@@ -21,26 +26,32 @@
Depends: ferret-vis
-Depends: magics++
+Depends: cdftools
-Depends: freefoam
+Depends: fcm
+Why: Used to build multiple Fortran packages
-Depends: visit
-Homepage: http://www.llnl.gov/visit/
-WNPP: 395573
-Responsible: Alastair McKinstry <mckinstry@debian.org>
-Pkg-Description: Interactive parallel visualization and graphical analysis tool
-Why: Used for 3-D visualisation of netCDF datasets.
+Depends: makedepf90
+Why: Used by Fortran build tools
+
+Depends: flextra
+
+Depends: flexpart
+
+Depends: magics++
+
+Depends: cylc
+Why: Met monitoring and workflow tool
Suggests: paraview
Why: 3-D visualisation of climate (netCDF) files
-Depends: libgrib-api-tools
-Responsible: Enrico Zini <enrico@debian.org>
+Depends: libeccodes-api-tools
+Responsible: Alastair McKinstry <mckinstry@debian.org>
Depends: ecaccess
-Depends: geonetwork
+Suggests: geonetwork
Homepage: http://geonetwork-opensource.org
Responsible: Alastair McKinstry <mckinstry@debian.org>
WNPP: 529453
@@ -53,28 +64,49 @@
related to the use of the software.
Depends: ncl
-WNPP: 531982
-License: BSD
Homepage: http://www.ncl.ucar.edu/overview.shtml
-Pkg-Description: NCAR Command Language and NCAR Graphics package
- The NCAR Command Language (NCL) is a free interpreted language designed
- specifically for scientific data processing and visualization. NCL has robust
- file input and output. It can read and write netCDF-3, netCDF-4 classic (as
- of version 4.3.1), HDF4, binary, and ASCII data, and read HDF-EOS2, GRIB1 and
- GRIB2 (as of version 4.3.0). The graphics are world class and highly
- customizable.
+
+Depends: python-cdo
+
+Depends: python3-cdo
Depends: python-netcdf
+Depends: python3-netcdf4
+
Depends: python-grib
+Depends: python3-eccodes
+
Depends: python-drslib
+Depends: python3-drslib
+
+Depends: python-metaconfig
+
+Depends: python3-metaconfig
+
+Depends: python-gsw
+
+Depends: python3-gsw
+
+Depends: python-iapws
+
+Depends: python3-iapws
+
Depends: python-cmor
+Depends: python3-cmor
+
+Depends: python-ferret
+
+Depends: python3-ferret
+
Depends: python-sphere
-Depends: cmip5-cmor-tables
+Depends: python3-sphere
+
+Depends: cmor-tables
Suggests: gnudatalanguage, r-base
Why: Used for data manipiulation
diff -Nru debian-science-1.6/tasks/meteorology-dev debian-science-1.7/tasks/meteorology-dev
--- debian-science-1.6/tasks/meteorology-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/meteorology-dev 2017-01-24 17:52:54.000000000 +0100
@@ -9,12 +9,24 @@
Depends: libemos-dev
Why: standard library for BUFR formats
+Depends: mpi-defaults-dev
+Why: Much Meteorology software is MPI enabled
+
+Depends: libcoarrays-dev, libcoarrays-bin
+Why: Enable Co-Array Fortran features in gfortran
+
+Suggests: udunits-bin
+Why: udunits is a useful utility
+
Depends: libgadap-dev
Depends: libcmor-dev
-Depends: libgrib-api-dev, libgrib-api-tools
-Why: grib-api is the standard library for GRIB2 file management.
+Depends: libcdi-dev
+Why: Development files for the climate data interface library
+
+Depends: libeccodes-dev, libeccodes-tools
+Why: Eccodes is the new standard library for GRIB and BUFR file management.
Depends: libgrib2c-dev
Why: API for reading GRIB2 files
@@ -35,6 +47,8 @@
Depends: liblapack-dev, libblas-dev
Why: Most forecasting codes use BLAS and LAPACK
+Suggests: libcblas-dev
+
Depends: libfftw3-dev, fftw-dev, sfftw-dev
Depends: libblas-doc, liblapack-doc, libfftw3-doc
@@ -45,9 +59,15 @@
Depends: libterralib-dev
+Depends: libmagics++-dev
+Why: Needed for ECMWF software stack
+
Suggests: gfortran
Why: Much meteorological code is developed in Fortran.
+Depends: libaec-dev
+Why: NetCDF4/HDF5 now uses AEC compression.
+
Suggests: ksh
Why: Many Meteorology codes use ksh as their scripting shells.
@@ -75,8 +95,8 @@
Depends: wcslib-dev, wcslib-doc
Why: Co-ordinates system for geographical data in FITS files
-Depends: libfreefoam-dev
-
Depends: librsl-dev
Depends: libwreport-dev
+
+Suggests: python3-coards | python-coards
diff -Nru debian-science-1.6/tasks/nanoscale-physics debian-science-1.7/tasks/nanoscale-physics
--- debian-science-1.6/tasks/nanoscale-physics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/nanoscale-physics 2017-01-24 17:52:54.000000000 +0100
@@ -29,7 +29,7 @@
Depends: fityk
-Depends: gnuplot | gnuplot5, grace
+Depends: gnuplot, grace
Depends: horae, ifeffit, sixpack
@@ -217,7 +217,7 @@
Depends: python-ase
Published-Title: An object-oriented scripting interface to a legacy electronic structure code
-Published-Author: S. R. Bahn and K. W. Jacobsen
+Published-Authors: S. R. Bahn and K. W. Jacobsen
Published-Year: 2002
Published-In: Computing in Science and Engineering, 4:56-66
Published-URL: http://dx.doi.org/10.1109/5992.998641
diff -Nru debian-science-1.6/tasks/nanoscale-physics-dev debian-science-1.7/tasks/nanoscale-physics-dev
--- debian-science-1.6/tasks/nanoscale-physics-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/nanoscale-physics-dev 2017-01-24 17:52:54.000000000 +0100
@@ -13,6 +13,8 @@
Depends: libblas-dev, libblas-doc, liblapack-dev, liblapack-doc
+Suggests: libcblas-dev
+
Depends: libetsf-io-dev, libetsf-io-doc
Suggests: libfftw3-doc
diff -Nru debian-science-1.6/tasks/numericalcomputation debian-science-1.7/tasks/numericalcomputation
--- debian-science-1.6/tasks/numericalcomputation 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/numericalcomputation 2017-01-24 17:52:54.000000000 +0100
@@ -100,10 +100,12 @@
Suggests: libsundials-serial-dev, octave-sundials
-Depends: coinor-symphony
+Depends: coinor-symphony, coinor-cbc
Depends: coinor-clp
+Suggests: coinor-libcoinmp-dev
+
Suggests: libquantum-dev
Depends: metis-edf
@@ -122,6 +124,12 @@
Depends: calculix-ccx
+Suggests: calculix-ccx-doc, calculix-ccx-test
+
+Depends: calculix-cgx
+
+Suggests: calculix-cgx-examples
+
Depends: python-sfepy
Depends: python3-bitstring | python-bitstring
@@ -134,9 +142,11 @@
Depends: libclblas-dev
+Suggests: libcblas-dev
+
Depends: libclfft-dev
-Depends: pysph
+Depends: python-pysph
Depends: python3-woo | python-woo
@@ -152,10 +162,40 @@
Depends: pyzo
-Depends: gnudatalanguage
-
Depends: python3-arrayfire | python-arrayfire
Depends: libclsparse-dev
Depends: librsb-dev
+
+Depends: libppl-dev
+
+Depends: python-escript | python3-escript | python-escript-mpi | python3-escript-mpi
+Why: programming tool for implementing mathematical models in Python using the finite element method (FEM)
+
+Depends: python3-theano | python-theano
+
+Suggests: theano-doc
+
+Depends: python3-sparse | python-sparse
+
+Suggests: evolver-ogl | evolver-nox
+
+Depends: toulbar2
+
+Suggests: python3-dbfread
+
+Suggests: python3-leather
+
+Suggests: python3-agate,
+ python3-agate-dbf,
+ python3-agate-excel,
+ python3-agate-sql
+
+Suggests: python3-spyder-line-profiler,
+ python3-spyder-memory-profiler,
+ python3-spyder-unittest
+
+Depends: xtensor-dev
+
+Depends: xtensor-python-dev
diff -Nru debian-science-1.6/tasks/physics debian-science-1.7/tasks/physics
--- debian-science-1.6/tasks/physics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/physics 2017-01-24 17:52:54.000000000 +0100
@@ -30,7 +30,7 @@
Depends: feynmf
-Depends: freefoam
+Depends: openfoam
Depends: fityk
@@ -202,3 +202,7 @@
Pkg-URL: http://people.debian.org/~tille/packages/fdmnes/
Depends: pyfr
+
+Suggests: evolver-ogl | evolver-nox
+
+Depends: toulbar2
diff -Nru debian-science-1.6/tasks/physics-dev debian-science-1.7/tasks/physics-dev
--- debian-science-1.6/tasks/physics-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/physics-dev 2017-01-24 17:52:54.000000000 +0100
@@ -6,8 +6,6 @@
.
You might also be interested in the science-physics metapackage.
-Depends: libfreefoam-dev
-
Depends: pyfai
Depends: libnfft3-dev
@@ -32,3 +30,12 @@
Depends: libplb-dev
Depends: libasl-dev
+
+Depends: trilinos-all-dev
+
+Depends: libdeal.ii-dev
+
+Depends: libp4est-dev
+
+Depends: fenics, python-dolfin
+Why: Automated Solution of Partial Differential Equations
diff -Nru debian-science-1.6/tasks/robotics debian-science-1.7/tasks/robotics
--- debian-science-1.6/tasks/robotics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/robotics 2017-01-24 17:52:54.000000000 +0100
@@ -132,7 +132,12 @@
applications.
-Depends: ros-mk, rosbuild, roslang, rosbash, python-rosclean, python-roscreate, python-rosmake, python-rosunit
+Depends: ros-desktop-full,
+ ros-desktop,
+ ros-perception,
+ ros-simulators
+
+Depends: ros-opencv-apps
Depends: openrtm
Homepage: http://www.openrtm.org/
@@ -173,7 +178,7 @@
large consortium of researchers and engineers around the world. It is
written in C++ and released under the BSD license.
-Depends: gazebo5
+Depends: gazebo7
Depends: openrave
Homepage: http://openrave.org/
@@ -196,7 +201,7 @@
Suggests: libcoin60-runtime, libvtk5.4
-Suggests: octave, gnuplot | gnuplot5
+Suggests: octave, gnuplot
Depends: octomap-tools, octovis
diff -Nru debian-science-1.6/tasks/robotics-dev debian-science-1.7/tasks/robotics-dev
--- debian-science-1.6/tasks/robotics-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/robotics-dev 2017-01-24 17:52:54.000000000 +0100
@@ -29,7 +29,7 @@
Depends: libslicot-dev
-Depends: libsdformat-dev
+Depends: libsdformat4-dev
Depends: libconsole-bridge-dev
@@ -37,7 +37,7 @@
Depends: libccd-dev
-Depends: libgazebo5-dev
+Depends: libgazebo7-dev
Depends: libsimbody-dev
@@ -48,3 +48,12 @@
Depends: libignition-msgs-dev
Depends: libkido-dev
+
+Depends: ros-desktop-full-dev,
+ ros-desktop-dev,
+ ros-perception-dev,
+ ros-simulators-dev,
+ ros-desktop-full-python-dev,
+ ros-desktop-full-lisp-dev
+
+Depends: libpcl-dev
diff -Nru debian-science-1.6/tasks/simulations debian-science-1.7/tasks/simulations
--- debian-science-1.6/tasks/simulations 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/simulations 2017-01-24 17:52:54.000000000 +0100
@@ -10,7 +10,7 @@
Depends: python-deap
-Depends: freefoam
+Depends: openfoam
Depends: getdp
@@ -23,14 +23,25 @@
Depends: calculix-ccx
+Suggests: calculix-ccx-doc, calculix-ccx-test
+
+Depends: calculix-cgx
+
+Suggests: calculix-cgx-examples
+
Depends: python-sfepy
Suggests: libopensurgsim-dev
-Depends: pysph
+Depends: python-pysph
Depends: python3-woo | python-woo
Depends: libceres-dev
+Depends: gazebo7
+
Suggests: ceres-solver-doc
+
+Depends: python-escript | python3-escript | python-escript-mpi | python3-escript-mpi
+Why: programming tool for implementing mathematical models in Python using the finite element method (FEM)
diff -Nru debian-science-1.6/tasks/statistics debian-science-1.7/tasks/statistics
--- debian-science-1.6/tasks/statistics 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/statistics 2017-01-24 17:52:54.000000000 +0100
@@ -11,27 +11,29 @@
Depends: ess, littler, r-recommended, rkward
Why: R utilities or frontends
-Depends: r-cran-mapproj, r-cran-abind, r-cran-bayesm, \
- r-cran-boot, r-cran-cairodevice, r-cran-car, r-cran-chron, \
- r-cran-cluster, r-cran-coda, r-cran-codetools, r-cran-date, \
- r-cran-dbi, r-cran-rms, r-cran-eco, \
- r-cran-effects, r-cran-fbasics, \
- r-cran-fcopulae, r-cran-fecofin, r-cran-fextremes, \
- r-cran-fmultivar, r-cran-foptions, r-cran-foreign, \
- r-cran-fportfolio, r-cran-timedate, r-cran-gdata, r-cran-gmodels, \
- r-cran-gplots, r-cran-gregmisc, r-cran-gtools, r-cran-hdf5, \
- r-cran-hmisc, r-cran-its, r-cran-kernsmooth, r-cran-lattice, \
- r-cran-latticeextra, r-cran-lhs, r-cran-lme4, r-cran-lmtest, \
- r-cran-mapdata, r-cran-maps, r-cran-matchit, r-cran-matrix, \
- r-cran-mcmcpack, r-cran-mgcv, r-cran-misc3d, r-cran-mnp, \
- r-cran-multcomp, r-cran-mvtnorm, r-cran-nlme, r-cran-pscl, \
- r-cran-psy, r-cran-qtl, r-cran-quadprog, r-cran-rcmdr, \
- r-cran-relimp, r-cran-rggobi, r-cran-rgl, r-cran-rgtk2, \
- r-cran-rmpi, r-cran-rmysql, r-cran-rodbc, \
- r-cran-rpart, r-cran-rpvm, r-cran-rquantlib, r-cran-rserve, \
- r-cran-rsprng, r-cran-sandwich, r-cran-sm, r-cran-snow, \
- r-cran-strucchange, r-cran-survival, r-cran-tkrplot, \
- r-cran-tseries, r-cran-vgam, r-cran-mass, r-cran-xml, \
+Depends: r-cran-mapproj, r-cran-abind, r-cran-arm, r-cran-bayesm,
+ r-cran-boot, r-cran-cairodevice, r-cran-ca, r-cran-car, r-cran-caret, r-cran-chron,
+ r-cran-cluster, r-cran-coda, r-cran-codetools,
+ r-cran-date, r-cran-dbi,
+ r-cran-eco, r-cran-effects, r-cran-erm,
+ r-cran-fbasics, r-cran-fcopulae, r-cran-fecofin, r-cran-fextremes,
+ r-cran-fmultivar, r-cran-foptions, r-cran-foreign, r-cran-fportfolio,
+ r-cran-gam, r-cran-gdata, r-cran-geepack, r-cran-glmnet, r-cran-gmodels,
+ r-cran-goftest, r-cran-gplots, r-cran-gregmisc, r-cran-gtools,
+ r-cran-hdf5, r-cran-hmisc, r-cran-its, r-cran-kernsmooth, r-cran-lattice,
+ r-cran-latticeextra, r-cran-lavaan, r-cran-lhs, r-cran-lme4, r-cran-lmtest,
+ r-cran-mapdata, r-cran-maps, r-cran-maptree, r-cran-matchit, r-cran-matrix,
+ r-cran-mcmcpack, r-cran-mgcv, r-cran-misc3d, r-cran-modelmetrics, r-cran-mnp,
+ r-cran-multcomp, r-cran-mvtnorm, r-cran-nlme, r-cran-pscl,
+ r-cran-psy, r-cran-qtl, r-cran-quadprog, r-cran-qvcalc,
+ r-cran-randomfieldsutils, r-cran-raschsampler, r-cran-rcmdr,
+ r-cran-relimp, r-cran-rggobi, r-cran-rgl, r-cran-rgtk2,
+ r-cran-rmpi, r-cran-rms, r-cran-rmysql, r-cran-rodbc,
+ r-cran-rpart, r-cran-rpvm, r-cran-rquantlib, r-cran-rserve,
+ r-cran-rsprng,
+ r-cran-sandwich, r-cran-sem, r-cran-sm, r-cran-snow,
+ r-cran-strucchange, r-cran-survival, r-cran-timedate, r-cran-tkrplot,
+ r-cran-tseries, r-cran-vgam, r-cran-mass, r-cran-xml,
r-cran-zelig, r-cran-zoo
Why: R CRAN
@@ -51,8 +53,18 @@
Suggests: r-cran-spc
+Suggests: r-cran-mlmrev
+
Depends: r-cran-vcd, r-cran-vcdextra
+Suggests: r-cran-gnm
+
+Depends: r-cran-corpcor
+
+Depends: r-cran-bradleyterry2
+
+Suggests: r-cran-brglm
+
Depends: r-cran-estimability, r-cran-elliptic, r-cran-logspline, r-cran-lsmeans, r-cran-modeltools
Depends: r-cran-rinside, r-cran-pbapply, r-cran-pbivnorm, r-cran-contfrac, r-cran-desolve, r-cran-hypergeo, r-cran-coin, r-cran-bayesfactor, r-cran-afex, r-cran-bms, r-cran-conting
@@ -152,3 +164,7 @@
Suggests: r-cran-princurve
Suggests: r-cran-rngtools
+
+Depends: pspp
+
+Depends: datamash
diff -Nru debian-science-1.6/tasks/tools debian-science-1.7/tasks/tools
--- debian-science-1.6/tasks/tools 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/tools 2017-01-24 17:52:54.000000000 +0100
@@ -23,3 +23,11 @@
Depends: science-workflow
Depends: hdf-compass
+
+Depends: python3-pybind11 | python-pybind11
+
+Suggests: python3-pydap | python-pydap
+
+Depends: python3-h5netcdf | python-h5netcdf
+
+Suggests: python3-pweave
diff -Nru debian-science-1.6/tasks/typesetting debian-science-1.7/tasks/typesetting
--- debian-science-1.6/tasks/typesetting 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/typesetting 2017-01-24 17:52:54.000000000 +0100
@@ -25,7 +25,9 @@
Suggests: openoffice.org-dmaths
-Suggests: r-cran-xtable, r-cran-gridbase, r-cran-scatterd3, r-cran-shape
+Depends: r-cran-knitr
+
+Suggests: r-cran-xtable, r-cran-gridbase, r-cran-highr, r-cran-scatterd3, r-cran-shape
Suggests: csv2latex
@@ -89,3 +91,5 @@
Suggests: libqtexengine-dev
Depends: gummi
+
+Depends: sagetex
diff -Nru debian-science-1.6/tasks/viewing debian-science-1.7/tasks/viewing
--- debian-science-1.6/tasks/viewing 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/viewing 2017-01-24 17:52:54.000000000 +0100
@@ -22,7 +22,7 @@
Depends: fityk
-Depends: gnuplot | gnuplot5, grace, gri, labplot, graphviz, pyxplot, plotdrop, qtiplot
+Depends: gnuplot, grace, gri, labplot, graphviz, pyxplot, plotdrop, qtiplot
Depends: python-guiqwt
Why: collection of widgets based on QWT5 for data visualisation.
@@ -59,9 +59,12 @@
Suggests: texlive-pictures
Suggests: pgplot5
-Why: non-free
+Remark: Giza-dev is a DFSG-free replacement for pgplot5.
-Suggests: r-cran-plotrix, r-cran-colorspace, r-cran-labeling, r-cran-scales, r-cran-ggplot2, r-cran-scatterplot3d, r-cran-vioplot, r-cran-shape
+Depends: giza-dev
+Remark: Giza-dev is a DFSG-free replacement for pgplot5.
+
+Suggests: r-cran-plotrix, r-cran-colorspace, r-cran-labeling, r-cran-scales, r-cran-ggplot2, r-cran-scatterplot3d, r-cran-vioplot, r-cran-shape, r-cran-qqman
Suggests: r-cran-aplpack
@@ -143,3 +146,9 @@
WNPP: 753590
Depends: rlplot
+
+Depends: solvespace
+
+Depends: gfsview
+
+Suggests: libgts-bin
diff -Nru debian-science-1.6/tasks/viewing-dev debian-science-1.7/tasks/viewing-dev
--- debian-science-1.6/tasks/viewing-dev 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/viewing-dev 2017-01-24 17:52:54.000000000 +0100
@@ -30,7 +30,7 @@
Depends: python-pivy
-Depends: libgtkdataboxmm-dev, libgtkdatabox-0.9.2-0-dev
+Depends: libgtkdataboxmm-dev, libgtkdatabox-dev
Depends: libeinspline-dev
@@ -53,3 +53,21 @@
Depends: libglbinding-dev
Depends: libforge-dev
+
+Depends: libgli-dev
+
+Depends: libglobjects-dev
+
+Depends: libslvs1-dev
+
+Depends: libgts-dev
+
+Depends: python3-vispy | python-vispy
+
+Suggests: libcollada-dom2.4-dp-dev
+
+Depends: libgl2ps-dev
+
+Depends: libqglviewer-dev-qt5 | libqglviewer-dev-qt4
+
+Depends: python3-qwt | python-qwt
diff -Nru debian-science-1.6/tasks/workflow debian-science-1.7/tasks/workflow
--- debian-science-1.6/tasks/workflow 2016-04-28 11:51:50.000000000 +0200
+++ debian-science-1.7/tasks/workflow 2017-01-24 17:52:54.000000000 +0100
@@ -17,3 +17,5 @@
Depends: python-nipype
Depends: gearman, gearman-tools
+
+Depends: python-toil
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