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Bug#859174: marked as done (unblock: jmodeltest/2.1.10+dfsg-4)

Your message dated Fri, 31 Mar 2017 19:52:00 +0000
with message-id <E1cu2aW-0007vt-VT@respighi.debian.org>
and subject line unblock jmodeltest
has caused the Debian Bug report #859174,
regarding unblock: jmodeltest/2.1.10+dfsg-4
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
859174: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859174
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: unblock

Please unblock package jmodeltest

Applied the patch from Ole Streicher to fix #859107

unblock jmodeltest/2.1.10+dfsg-4

-- System Information:
Debian Release: 8.7
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

diff -Nru jmodeltest-2.1.10+dfsg/debian/changelog jmodeltest-2.1.10+dfsg/debian/changelog
--- jmodeltest-2.1.10+dfsg/debian/changelog	2016-08-17 15:43:53.000000000 +0200
+++ jmodeltest-2.1.10+dfsg/debian/changelog	2017-03-31 08:24:53.000000000 +0200
@@ -1,3 +1,10 @@
+jmodeltest (2.1.10+dfsg-4) unstable; urgency=medium
+
+  [ Ole Streicher ]
+  * Remove BrowserLauncher dependency. Closes: #859107
+
+ -- Andreas Tille <tille@debian.org>  Fri, 31 Mar 2017 08:24:53 +0200
+
 jmodeltest (2.1.10+dfsg-3) unstable; urgency=medium
 
   * Add missing command line arguments to wrapper
diff -Nru jmodeltest-2.1.10+dfsg/debian/patches/remove_BrowserLauncher_reference.patch jmodeltest-2.1.10+dfsg/debian/patches/remove_BrowserLauncher_reference.patch
--- jmodeltest-2.1.10+dfsg/debian/patches/remove_BrowserLauncher_reference.patch	1970-01-01 01:00:00.000000000 +0100
+++ jmodeltest-2.1.10+dfsg/debian/patches/remove_BrowserLauncher_reference.patch	2017-03-31 08:24:53.000000000 +0200
@@ -0,0 +1,53 @@
+Author: Ole Streicher <olebole@debian.org>
+Description: Remove BrowserLauncher references.
+
+They were just a fallback if java.awt.Desktop.getDesktop() is not available.
+
+--- a/src/main/java/es/uvigo/darwin/jmodeltest/gui/FrameMain.java
++++ b/src/main/java/es/uvigo/darwin/jmodeltest/gui/FrameMain.java
+@@ -56,7 +56,6 @@
+ import javax.swing.text.DefaultCaret;
+ 
+ import pal.tree.Tree;
+-import edu.stanford.ejalbert.BrowserLauncher;
+ import es.uvigo.darwin.jmodeltest.ModelTest;
+ import es.uvigo.darwin.jmodeltest.ModelTestConfiguration;
+ import es.uvigo.darwin.jmodeltest.ModelTestService;
+@@ -1096,9 +1095,6 @@
+ 				Desktop desktop = Desktop.getDesktop();
+ 				URI wikiURI = new URI(ModelTest.WIKI);
+ 				desktop.browse(wikiURI);
+-			} else {
+-				BrowserLauncher launcher = new BrowserLauncher();
+-				launcher.openURLinBrowser(ModelTest.WIKI);
+ 			}
+ 		} catch (Exception f) {
+ 			JOptionPane.showMessageDialog(new JFrame(), f.getMessage(),
+@@ -1113,9 +1109,6 @@
+ 				Desktop desktop = Desktop.getDesktop();
+ 				URI groupURI = new URI(ModelTest.DISCUSSION_GROUP);
+ 				desktop.browse(groupURI);
+-			} else {
+-				BrowserLauncher launcher = new BrowserLauncher();
+-				launcher.openURLinBrowser(ModelTest.DISCUSSION_GROUP);
+ 			}
+ 		} catch (Exception f) {
+ 			JOptionPane.showMessageDialog(new JFrame(), f.getMessage(),
+@@ -1129,9 +1122,6 @@
+ 				Desktop desktop = Desktop.getDesktop();
+ 				URI jModelTestURI = new URI(ModelTest.URL);
+ 				desktop.browse(jModelTestURI);
+-			} else {
+-				BrowserLauncher launcher = new BrowserLauncher();
+-				launcher.openURLinBrowser(ModelTest.URL);
+ 			}
+ 		} catch (Exception f) {
+ 			JOptionPane.showMessageDialog(new JFrame(), f.getMessage(),
+@@ -1145,7 +1135,6 @@
+ 			credits += "Alignment conversion with ALTER by Daniel Glez-Pena et al.\n";
+ 			credits += "Phylogenetic trees management with PAL: Phylogenetic Analysis Library by A. Drummond and K. Strimmer\n";
+ 			credits += "Table utilities by Philip Milne\n";
+-			credits += "BrowserLauncher by Eric Albert and Jeff Chapman\n";
+ 
+ 			JOptionPane.showMessageDialog(new JFrame(), credits,
+ 					"jModelTest - CREDITS", JOptionPane.INFORMATION_MESSAGE,
diff -Nru jmodeltest-2.1.10+dfsg/debian/patches/series jmodeltest-2.1.10+dfsg/debian/patches/series
--- jmodeltest-2.1.10+dfsg/debian/patches/series	2016-08-17 15:43:53.000000000 +0200
+++ jmodeltest-2.1.10+dfsg/debian/patches/series	2017-03-31 08:24:53.000000000 +0200
@@ -2,3 +2,4 @@
 do_not_chmod_anything_in_usr_bin.patch
 adapt_config.patch
 replace_natbib_bst_by_plainnat.patch
+remove_BrowserLauncher_reference.patch

--- End Message ---
--- Begin Message --- 
Unblocked jmodeltest.

--- End Message ---
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