Bug#781477: unblock: debian-science/1.4 - provide promissed but missing debdiff
Hi,
the bug report was lacking the debdiff which is attached to this mail.
Kind regards
Andreas.
--
http://fam-tille.de
diff -Nru debian-science-1.3/debian/changelog debian-science-1.4/debian/changelog
--- debian-science-1.3/debian/changelog 2014-10-24 11:32:27.000000000 +0200
+++ debian-science-1.4/debian/changelog 2015-03-29 21:10:20.000000000 +0200
@@ -1,3 +1,9 @@
+debian-science (1.4) unstable; urgency=medium
+
+ * Rerender Debian Science metapackages to reflect Jessie package pool.
+
+ -- Andreas Tille <tille@debian.org> Sun, 29 Mar 2015 20:53:40 +0200
+
debian-science (1.3) unstable; urgency=medium
[ Andreas Tille ]
diff -Nru debian-science-1.3/debian/control debian-science-1.4/debian/control
--- debian-science-1.3/debian/control 2014-10-24 11:32:27.000000000 +0200
+++ debian-science-1.4/debian/control 2015-03-29 21:10:20.000000000 +0200
@@ -100,7 +100,6 @@
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: astronomical-almanac,
- boinc-app-milkyway,
boinc-app-seti,
eso-midas,
esorex,
@@ -109,7 +108,6 @@
ftools-fv,
funtools,
gcx,
- gliese,
gpredict,
gyoto,
lightspeed,
@@ -134,15 +132,16 @@
wxastrocapture,
xpa-tools,
xplanet,
- yale,
yorick-full
Suggests: astroml,
astroquery,
audela,
+ boinc-app-milkyway,
casacore-tools,
cpl-plugin-amber,
cpl-plugin-fors,
cpl-plugin-giraf,
+ gliese,
iraf,
linoccult,
orbfit,
@@ -166,6 +165,7 @@
xorsa,
xtide,
xtide-data,
+ yale,
yorick-cubeview,
yorick-mira,
yorick-spydr,
@@ -192,7 +192,6 @@
libstarlink-pal-dev,
libwcstools-dev,
python-cpl,
- python-healpy,
python-pyfits,
python-pywcs,
slang-cfitsio,
@@ -203,7 +202,8 @@
libhealipx-cxx-dev,
libivoafits-java,
libworldwind-java,
- python-astropy-legacy
+ python-astropy-legacy,
+ python-healpy
Description: Debian Science Astronomy-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Astronomy.
@@ -260,7 +260,6 @@
gdis,
gdpc,
gelemental,
- ghemical,
gperiodic,
gromacs | gromacs-mpich | gromacs-openmpi,
jmol,
@@ -284,20 +283,21 @@
qutemol,
rasmol,
tandem-mass,
- v-sim,
viewmol,
xbs,
xdrawchem,
xmakemol-gl | xmakemol
Suggests: fdmnes,
gdpc-examples,
+ ghemical,
libegad,
libint,
molden,
molekel,
openchrom,
python-mzml-doc,
- tinker
+ tinker,
+ v-sim
Description: Debian Science Chemistry packages
This metapackage will install Debian Science packages related to
Chemistry. You might also be interested in the field::chemistry
@@ -363,25 +363,25 @@
Recommends: dmtcp,
environment-modules,
globus-core,
- gridengine-client,
- gridengine-exec,
- gridengine-master,
- gridengine-qmon,
htcondor,
ipython,
mpich,
mpich2python,
openmpi-bin,
openmpipython,
- python-mpi,
- torque-common,
- torque-server
+ python-mpi
Suggests: coop-computing-tools,
+ gridengine-client,
+ gridengine-exec,
+ gridengine-master,
+ gridengine-qmon,
hpcc,
nordugrid-arc-nox,
octave-mpi,
psom,
- python-mpi4py
+ python-mpi4py,
+ torque-common,
+ torque-server
Description: Debian Science Distributed Computing packages
This metapackage will install Debian Science packages useful for
various types of distributed computing, such as grid-, cloud-, cluster-
@@ -419,7 +419,6 @@
r-cran-coda,
r-cran-fbonds,
r-cran-fimport,
- r-cran-fnonlinear,
r-cran-foreign,
r-cran-funitroots,
r-cran-hmisc,
@@ -442,6 +441,7 @@
ess,
matlab-support,
python-econpy,
+ r-cran-fnonlinear,
science-mathematics,
science-numericalcomputation,
science-statistics,
@@ -466,7 +466,6 @@
confluence,
covered,
drawtiming,
- easyspice,
electric,
freehdl,
fritzing,
@@ -474,19 +473,15 @@
geda,
geda-xgsch2pcb,
gerbv,
- ghdl,
gnucap,
gnusim8085,
gplcver,
gputils,
- gspiceui,
gtkwave,
- gwave,
iverilog,
kicad,
linsmith,
magic,
- ngspice,
oregano,
pcb,
qelectrotech,
@@ -498,9 +493,13 @@
uisp,
verilator,
visolate
-Suggests: geda-doc,
+Suggests: easyspice,
+ geda-doc,
geda-examples,
geda-gaf,
+ ghdl,
+ gspiceui,
+ gwave,
herb,
kicad-doc-de,
kicad-doc-en,
@@ -512,6 +511,7 @@
klogic,
ksimus,
libfeel++-dev,
+ ngspice,
qflow,
qucs,
vbpp,
@@ -581,33 +581,23 @@
code-aster,
code-aster-gui,
code-saturne,
- diet-agent,
dime,
eficas,
feel++-apps,
freecad,
freefoam,
gerris,
- getdp,
gmsh,
hdfview,
libadios-bin,
librecad,
libsilo-bin,
- metis-edf,
- netgen,
oce-draw,
python-fiat,
python-openturns,
python-silo,
pythoncad,
sailcut,
- salome-gui,
- salome-jobmanager,
- salome-med,
- salome-paravis,
- salome-smesh,
- salome-yacs,
sfc,
syrthes,
tetgen,
@@ -615,12 +605,22 @@
Suggests: ann-tools,
avl,
brlcad,
+ diet-agent,
ecs,
+ getdp,
logcentral,
logcentral-tools,
+ metis-edf,
+ netgen,
pycgns,
r-cran-spc,
+ salome-gui,
+ salome-jobmanager,
salome-kernel,
+ salome-med,
+ salome-paravis,
+ salome-smesh,
+ salome-yacs,
tochnog,
varkon
Description: Debian Science Engineering packages
@@ -646,7 +646,6 @@
libdeal.ii-dev,
libdime-dev,
libdxflib-dev,
- libelmer-dev,
libexodusii-dev,
libfeel++-dev,
libflann-dev,
@@ -660,7 +659,6 @@
libmed-dev,
libmedc-dev,
libmedimport-dev,
- libmetis-edf-dev,
libnetcdf-dev,
libnfft3-dev,
libnlopt-dev,
@@ -675,16 +673,17 @@
python-collada,
python-netcdf,
r-cran-rnetcdf,
- salome-kernel-dev,
syfi-dev
Suggests: libdiet-admin2.8-dev,
libdiet-client2.8-dev,
libdiet-dagda2.8-dev,
libdiet-sed2.8-dev,
+ libelmer-dev,
libgtkdatabox-0.9.2-0-dev,
libgtkdataboxmm-dev,
libluminate-dev,
libmesh-dev,
+ libmetis-edf-dev,
libnetcdf-java,
libqwt-dev | libqwt5-qt4-dev,
libtet1.4-dev,
@@ -693,7 +692,8 @@
python-fftw3,
python-nfft3,
python3-fftw3,
- python3-nfft3
+ python3-nfft3,
+ salome-kernel-dev
Description: Debian Science Engineering-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Engineering.
@@ -714,7 +714,6 @@
r-cran-fgarch,
r-cran-fimport,
r-cran-fmultivar,
- r-cran-fnonlinear,
r-cran-foptions,
r-cran-fportfolio,
r-cran-fregression,
@@ -722,6 +721,7 @@
r-cran-funitroots,
r-cran-timedate,
r-cran-timeseries
+Suggests: r-cran-fnonlinear
Description: Debian Science financial engineering and computational finance
This metapackage will install Debian Science packages for financial
engineering and computational finance.
@@ -740,7 +740,6 @@
gpsbabel,
gpsd,
gpsd-clients,
- gpsdrive,
gpsman,
gpsmanshp,
gpstrans,
@@ -776,6 +775,7 @@
Suggests: drawmap,
earth3d,
googleearth-package,
+ gpsdrive,
grace6,
openjump,
sumo
@@ -790,13 +790,13 @@
Architecture: all
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: carmetal,
- drgeo,
- geogebra-kde,
- salome-geom
-Suggests: libcgal-dev,
+ geogebra-kde
+Suggests: drgeo,
+ libcgal-dev,
libgeometry-primitive-perl,
libmath-geometry-voronoi-perl,
- octave-geometry
+ octave-geometry,
+ salome-geom
Description: Debian Science geometry packages
This metapackage will install Debian Science packages related to
geometry. You might also be interested in the field::mathematics
@@ -1055,7 +1055,6 @@
link-grammar,
mbt,
mbtserver,
- sequitur-g2p,
timbl,
timblserver,
ucto,
@@ -1071,6 +1070,7 @@
python-nltk,
python-timbl,
python3-nltk,
+ sequitur-g2p,
travatar,
wnsqlbuilder
Description: Debian Science Linguistics packages
@@ -1209,7 +1209,6 @@
geogebra,
geomview,
gerris,
- getdp,
ginac-tools,
gmsh,
hol-light,
@@ -1222,8 +1221,6 @@
mcl,
minisat,
mumps-test,
- nauty,
- netgen,
octave,
pari-gp,
polybori,
@@ -1243,7 +1240,6 @@
science-statistics,
scilab,
scilab-ann,
- scilab-sivp,
scotch,
sfc,
snappea,
@@ -1257,10 +1253,13 @@
eprover,
gap-gapdoc,
gap-online-help,
+ getdp,
isabelle,
kseg,
magnus,
matlab-support,
+ nauty,
+ netgen,
netgen-doc,
octaviz,
pari-extra,
@@ -1268,6 +1267,7 @@
r-cran-evd,
sagemath,
scilab-scimax,
+ scilab-sivp,
scilab-swt
Description: Debian Science Mathematics packages
This metapackage will install Debian Science packages related to
@@ -1327,10 +1327,8 @@
libmuparser-dev,
libnewmat10-dev,
libnfft3-dev,
- libnglib-dev,
libopenblas-dev,
libopenturns-dev,
- libparmetis-dev,
libpolybori-dev,
libpolybori-groebner-dev,
libqcustomplot-dev,
@@ -1345,7 +1343,6 @@
libspooles-dev,
libstxxl-dev,
libsuitesparse-dev,
- libsuitesparse-metis-dev,
libsuperlu-dev,
libtnt-dev,
libug-dev,
@@ -1355,15 +1352,12 @@
python-dolfin,
python-ferari,
python-ffc,
- python-glpk,
python-linop | python3-linop,
python-numexpr | python3-numexpr,
python-numpy,
python-openopt,
python-openturns,
python-polybori,
- python-pynfft | python3-pynfft,
- python-pyoperators | python3-pyoperators,
python-pyviennacl,
python-ufc,
python-ufl,
@@ -1387,14 +1381,22 @@
libmtj-java,
libnauty-dev,
libnetlib-java,
+ libnglib-dev,
libntl-dev,
+ libparmetis-dev,
libqrupdate-dev,
+ libsuitesparse-metis-dev,
libtet1.4-dev,
libtet1.4.2-dev,
libtrilinos-dev,
openturns-examples,
python-fftw3,
- python3-fftw3
+ python-glpk,
+ python-pynfft,
+ python-pyoperators,
+ python3-fftw3,
+ python3-pynfft,
+ python3-pyoperators
Description: Debian Science Mathematics-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Mathematics.
@@ -1506,15 +1508,12 @@
garlic,
gdis,
ggobi,
- ghemical,
gnuplot,
gperiodic,
grace,
graphviz,
gsl-bin,
gwyddion,
- horae,
- ifeffit,
libblas3,
libfftw3-3,
libgsl0ldbl,
@@ -1530,7 +1529,6 @@
openmx,
psi3,
pymca,
- python-ase,
python-lmfit | python3-lmfit,
python-scientific,
python-scipy,
@@ -1540,9 +1538,7 @@
qtoctave,
quantum-espresso,
science-numericalcomputation,
- sixpack,
- udav,
- v-sim
+ udav
Suggests: ape,
atompaw,
bigdft,
@@ -1554,21 +1550,27 @@
extrema,
fdmnes,
feel++-apps,
+ ghemical,
gmsh,
gpaw,
gpiv,
gpivtools,
+ horae,
+ ifeffit,
libblacs-mpi1,
libscalapack-mpi1,
octaviz,
octopus,
openmpi-doc | mpich-doc | lam-mpidoc,
+ python-ase,
python-elemental,
qtiplot,
scidavis,
science-mathematics,
science-statistics,
scilab-sivp,
+ sixpack,
+ v-sim,
wannier90
Description: Debian Science Nanoscale Physics packages
This metapackage will install Debian Science packages related to
@@ -1596,9 +1598,6 @@
Recommends: abinit-doc,
fftw-dev,
gsl-bin,
- gsl-doc-info,
- gsl-doc-pdf,
- gsl-ref-html | gsl-ref-psdoc,
libblacs-mpi-dev,
libblas-dev,
libblas-doc,
@@ -1628,6 +1627,10 @@
science-mathematics-dev,
sfftw-dev
Suggests: crystfel-dev,
+ gsl-doc-info,
+ gsl-doc-pdf,
+ gsl-ref-html,
+ gsl-ref-psdoc,
libfeel++-dev,
libfftw3-doc,
libfox95,
@@ -1657,7 +1660,6 @@
caret,
dicom3tools,
dicomnifti,
- fsl,
fslview,
itksnap,
medcon,
@@ -1665,16 +1667,12 @@
mriconvert,
mricron,
nifti-bin,
- openmeeg-tools,
- openwalnut-qt4,
praat,
psignifit,
python-dicom,
python-dipy,
python-mvpa2,
python-nibabel,
- python-nipy,
- python-nipype,
python-nitime,
python-pyepl,
python-pypsignifit,
@@ -1690,12 +1688,17 @@
eeglab,
fieldtrip,
freesurfer,
+ fsl,
hid,
iqr,
lipsia,
mni-autoreg,
mni-n3,
+ openmeeg-tools,
+ openwalnut-qt4,
pysurfer,
+ python-nipy,
+ python-nipype,
science-psychophysics,
science-typesetting,
slicer,
@@ -1756,11 +1759,9 @@
libcolpack-dev,
libdune-grid-dev,
libsuitesparse-dev,
- libsuitesparse-metis-dev,
liggghts,
lush,
metis,
- metis-edf,
octave,
pdl,
python-csa,
@@ -1778,7 +1779,6 @@
r-base,
scilab,
scilab-ann,
- scilab-sivp,
spyder,
vitables,
yade,
@@ -1787,14 +1787,17 @@
libcneartree-dev,
libquantum-dev,
libscirenderer-java,
+ libsuitesparse-metis-dev,
libsundials-serial-dev,
matlab-support,
+ metis-edf,
octave-sundials,
octavede,
python-sciscipy,
scilab-jims,
scilab-metanet,
scilab-scimax,
+ scilab-sivp,
scilab-swt
Description: Debian Science Numerical Computation packages
This metapackage will install Debian Science packages useful for
@@ -1823,8 +1826,6 @@
gpiv,
gpivtools,
gwyddion,
- horae,
- ifeffit,
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
@@ -1841,9 +1842,7 @@
root-system,
science-electronics,
science-numericalcomputation,
- sixpack,
- tessa | tessa-mpi,
- v-sim
+ tessa | tessa-mpi
Suggests: blzpack,
clhep,
espresso++,
@@ -1851,6 +1850,8 @@
feel++-apps,
gate,
geant4,
+ horae,
+ ifeffit,
jfreemesh,
octaviz,
openctm-tools,
@@ -1859,7 +1860,9 @@
science-mathematics,
science-statistics,
scilab-sivp,
- spis
+ sixpack,
+ spis,
+ v-sim
Description: Debian Science Physics packages
This metapackage will install Debian Science packages related to Physics.
You might also be interested in the debtag field::physics and, depending on
@@ -1878,14 +1881,15 @@
pyfai,
python-multipletau | python3-multipletau,
python-openctm,
- python-pynfft | python3-pynfft,
python-quantities,
sfftw-dev
Suggests: libismrmrd-dev,
libtriangle-dev,
python-fftw3,
+ python-pynfft,
python-xrayutilities,
- python3-fftw3
+ python3-fftw3,
+ python3-pynfft
Description: Debian Science Physics-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Mathematics.
@@ -1909,7 +1913,6 @@
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: libfreenect-dev,
octave-psychtoolbox-3,
- psychopy,
python-pyepl,
python-pyoptical
Suggests: debruijn,
@@ -1917,6 +1920,7 @@
opensesame,
pebl,
psychlops,
+ psychopy,
psytoolkit,
python-pyxid,
science-bci,
@@ -1944,8 +1948,6 @@
morse-simulator,
octomap-tools,
octovis,
- robot-player,
- rtai,
xenomai-runtime
Suggests: arduino-mk,
d-collide,
@@ -1965,7 +1967,9 @@
orocos-rtt,
pcl,
roboop,
+ robot-player,
ros,
+ rtai,
rtnet,
solid
Description: Debian Robotics packages
@@ -2006,15 +2010,15 @@
Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
Recommends: esys-particle,
freefoam,
- getdp,
lammps,
liggghts,
music-bin,
python-deap,
- radiance,
sumo,
yade
-Suggests: fdmnes
+Suggests: fdmnes,
+ getdp,
+ radiance
Description: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
used to do simulations in different fields of science.
@@ -2102,7 +2106,6 @@
r-cran-quadprog,
r-cran-rcmdr,
r-cran-relimp,
- r-cran-rggobi,
r-cran-rgl,
r-cran-rgtk2,
r-cran-rmpi,
@@ -2116,7 +2119,6 @@
r-cran-sandwich,
r-cran-sm,
r-cran-snow,
- r-cran-spam,
r-cran-spatstat,
r-cran-statmod,
r-cran-strucchange,
@@ -2136,7 +2138,9 @@
python-stats,
r-cran-fcalendar,
r-cran-fecofin,
+ r-cran-rggobi,
r-cran-rpvm,
+ r-cran-spam,
r-cran-spc,
rstudio,
science-mathematics
@@ -2178,7 +2182,6 @@
texlive-math-extra,
texlive-publishers,
texlive-science,
- texmacs,
transfig,
xfig,
zotero-standalone
@@ -2193,6 +2196,7 @@
r-cran-xtable,
svgtoipe,
tellico,
+ texmacs,
texmaker,
xul-ext-zotero
Description: Debian Science typesetting packages
@@ -2238,7 +2242,6 @@
python-viper,
pyxplot,
qtiplot,
- scidavis,
trend,
udav,
veusz,
@@ -2272,6 +2275,7 @@
r-cran-plotrix,
r-cran-scales,
r-cran-scatterplot3d,
+ scidavis,
tcl-vtk,
texlive-pictures,
visit,
@@ -2303,7 +2307,6 @@
libvtk5-dev,
libvtk5-qt4-dev,
libvtk6-dev,
- libvtk6-java,
pdl,
python-gnuplot,
python-matplotlib,
@@ -2318,6 +2321,7 @@
python3-skimage-lib,
tcl-vtk,
vtk-examples
+Suggests: libvtk6-java
Description: Debian Science development of visualisation applications
This metapackage will install Debian Science packages related to the
development of applications to visualise scientific data.
diff -Nru debian-science-1.3/debian-science-tasks.desc debian-science-1.4/debian-science-tasks.desc
--- debian-science-1.3/debian-science-tasks.desc 2014-10-24 11:32:27.000000000 +0200
+++ debian-science-1.4/debian-science-tasks.desc 2015-03-29 21:10:20.000000000 +0200
@@ -25,9 +25,6 @@
xplanet
lynkeos.app
stardata-common
- gliese
- yale
- boinc-app-milkyway
boinc-app-seti
gyoto
skycat
@@ -75,7 +72,6 @@
libfits-java
tcl-fitstcl
libchealpix-dev
- python-healpy
Task: science-bci
Section: debian-science
@@ -138,7 +134,6 @@
gausssum
gchempaint
gdis
- ghemical
gcrystal
gcu-bin
gcu-plugin
@@ -156,7 +151,6 @@
viewmol
xdrawchem
xmakemol-gl
- v-sim
rasmol
adun.app
gdpc
@@ -242,12 +236,6 @@
science-distributedcomputing
Packages: list
ipython
- torque-common
- torque-server
- gridengine-client
- gridengine-exec
- gridengine-master
- gridengine-qmon
globus-core
openmpi-bin
mpich
@@ -300,7 +288,6 @@
r-cran-quadprog
r-cran-fbonds
r-cran-fimport
- r-cran-fnonlinear
r-cran-funitroots
r-cran-wdi
r-cran-pwt
@@ -337,7 +324,6 @@
geda
kicad
freehdl
- ghdl
iverilog
verilator
gplcver
@@ -349,9 +335,6 @@
texlive-latex-extra
linsmith
confluence
- ngspice
- gspiceui
- easyspice
gnucap
qelectrotech
covered
@@ -363,7 +346,6 @@
geda-xgsch2pcb
gnusim8085
gtkwave
- gwave
qsapecng
berkeley-abc
qrouter
@@ -408,8 +390,6 @@
libsilo-bin
gerris
gmsh
- getdp
- netgen
pythoncad
z88
freecad
@@ -417,7 +397,6 @@
python-openturns
code-aster-gui
code-aster
- metis-edf
eficas
code-saturne
hdfview
@@ -426,16 +405,9 @@
python-fiat
syrthes
freefoam
- diet-agent
tetgen
dime
cgns-convert
- salome-gui
- salome-jobmanager
- salome-med
- salome-paravis
- salome-smesh
- salome-yacs
libadios-bin
Task: science-engineering-dev
@@ -471,7 +443,6 @@
libopenturns-dev
libmadlib-dev
libslepc3.4.2-dev
- libelmer-dev
libug-dev
libmed-dev
libmedc-dev
@@ -483,14 +454,12 @@
libnfft3-dev
libnlopt-dev
libcoin80-dev
- libmetis-edf-dev
libslicot-dev
python-collada
libann-dev
libflann-dev
libdime-dev
libdxflib-dev
- salome-kernel-dev
Task: science-financial
Section: debian-science
@@ -511,7 +480,6 @@
r-cran-fgarch
r-cran-fimport
r-cran-fmultivar
- r-cran-fnonlinear
r-cran-foptions
r-cran-fregression
r-cran-ftrading
@@ -541,7 +509,6 @@
gpsbabel
gpx2shp
gpsd
- gpsdrive
gpsman
openscenegraph
thuban
@@ -587,8 +554,6 @@
science-geometry
Packages: list
carmetal
- salome-geom
- drgeo
geogebra-kde
Task: science-highenergy-physics
@@ -818,7 +783,6 @@
apertium
link-grammar
artha
- sequitur-g2p
timbl
timblserver
mbt
@@ -952,9 +916,7 @@
freefem
freefem3d
freefem++
- netgen
gmsh
- getdp
coq
proofgeneral
matita
@@ -1021,7 +983,6 @@
r-cran-quadprog
r-cran-rcmdr
r-cran-relimp
- r-cran-rggobi
r-cran-rgl
r-cran-rgtk2
r-cran-rmpi
@@ -1052,7 +1013,6 @@
r-cran-vcd
r-cran-permute
python-statsmodels
- r-cran-spam
r-cran-spatstat
r-cran-deldir
r-cran-fastcluster
@@ -1070,14 +1030,12 @@
freemat
mathomatic
scilab
- scilab-sivp
scilab-ann
regina-normal
snappea
lp-solve
libmatheval1
mumps-test
- nauty
geogebra
lrslib
dolfin-bin
@@ -1113,7 +1071,6 @@
Key:
science-mathematics-dev
Packages: list
- libnglib-dev
python-numpy
python-numexpr
libgsl0-dev
@@ -1123,7 +1080,6 @@
libopenblas-dev
libsuperlu-dev
libglpk-dev
- python-glpk
libglpk-java
libcgal-dev
libqhull-dev
@@ -1157,8 +1113,6 @@
libsparskit-dev
libspooles-dev
libsuitesparse-dev
- libsuitesparse-metis-dev
- libparmetis-dev
ufc
python-ufc
python-ffc
@@ -1201,9 +1155,7 @@
libdouble-conversion-dev
libfeel++-dev
python-ferari
- python-pynfft
libug-dev
- python-pyoperators
Task: science-meteorology
Section: debian-science
@@ -1317,9 +1269,6 @@
fityk
gnuplot
grace
- horae
- ifeffit
- sixpack
libblas3
liblapack3
libfftw3-3
@@ -1341,7 +1290,6 @@
pdl
gnudatalanguage
scilab
- scilab-sivp
scilab-ann
freemat
yorick
@@ -1364,9 +1312,7 @@
python-demgengeo
coinor-symphony
coinor-clp
- metis-edf
libsuitesparse-dev
- libsuitesparse-metis-dev
libdune-grid-dev
libcolpack-dev
libadolc-dev
@@ -1375,12 +1321,9 @@
avogadro
garlic
gdis
- ghemical
- v-sim
gwyddion
cp2k
pymca
- python-ase
cbflib-bin
axiom
maxima
@@ -1423,8 +1366,6 @@
sfftw-dev
libgsl0-dev
gsl-bin
- gsl-doc-info
- gsl-ref-html
libnetcdf-dev
netcdf-doc
r-cran-rnetcdf
@@ -1445,14 +1386,12 @@
libscalapack-mpi-dev
scalapack-doc
science-mathematics-dev
- libnglib-dev
python-numpy
python-numexpr
libatlas-base-dev
libopenblas-dev
libsuperlu-dev
libglpk-dev
- python-glpk
libglpk-java
libcgal-dev
libqhull-dev
@@ -1486,8 +1425,6 @@
libsparskit-dev
libspooles-dev
libsuitesparse-dev
- libsuitesparse-metis-dev
- libparmetis-dev
ufc
python-ufc
python-ffc
@@ -1527,9 +1464,7 @@
libdouble-conversion-dev
libfeel++-dev
python-ferari
- python-pynfft
libug-dev
- python-pyoperators
Task: science-neuroscience-cognitive
Section: debian-science
@@ -1558,20 +1493,15 @@
nifti-bin
python-nibabel
python-dicom
- fsl
fslview
python-mvpa2
- python-nipy
- python-nipype
python-nitime
python-dipy
- openwalnut-qt4
caret
python-pyepl
praat
dicom3tools
voxbo
- openmeeg-tools
mricron
itksnap
python-pypsignifit
@@ -1621,7 +1551,6 @@
pdl
gnudatalanguage
scilab
- scilab-sivp
scilab-ann
freemat
yorick
@@ -1644,9 +1573,7 @@
python-demgengeo
coinor-symphony
coinor-clp
- metis-edf
libsuitesparse-dev
- libsuitesparse-metis-dev
libdune-grid-dev
libcolpack-dev
libadolc-dev
@@ -1672,9 +1599,6 @@
feynmf
freefoam
fityk
- horae
- ifeffit
- sixpack
tessa
science-numericalcomputation
octave
@@ -1687,7 +1611,6 @@
pdl
gnudatalanguage
scilab
- scilab-sivp
scilab-ann
freemat
yorick
@@ -1710,9 +1633,7 @@
python-demgengeo
coinor-symphony
coinor-clp
- metis-edf
libsuitesparse-dev
- libsuitesparse-metis-dev
libdune-grid-dev
libcolpack-dev
libadolc-dev
@@ -1728,7 +1649,6 @@
geda
kicad
freehdl
- ghdl
iverilog
verilator
gplcver
@@ -1740,9 +1660,6 @@
texlive-latex-extra
linsmith
confluence
- ngspice
- gspiceui
- easyspice
gnucap
qelectrotech
covered
@@ -1754,12 +1671,10 @@
geda-xgsch2pcb
gnusim8085
gtkwave
- gwave
qsapecng
berkeley-abc
qrouter
magic
- v-sim
gpiv
gpivtools
maxima
@@ -1801,7 +1716,6 @@
python-openctm
python-quantities
python-multipletau
- python-pynfft
libfeel++-dev
Task: science-presentation
@@ -1834,7 +1748,6 @@
Key:
science-psychophysics
Packages: list
- psychopy
python-pyoptical
python-pyepl
libfreenect-dev
@@ -1851,12 +1764,10 @@
Key:
science-robotics
Packages: list
- rtai
xenomai-runtime
morse-simulator
choreonoid
liburdfdom-tools
- robot-player
octomap-tools
octovis
@@ -1903,8 +1814,6 @@
yade
python-deap
freefoam
- getdp
- radiance
music-bin
Task: science-social
@@ -1989,7 +1898,6 @@
r-cran-quadprog
r-cran-rcmdr
r-cran-relimp
- r-cran-rggobi
r-cran-rgl
r-cran-rgtk2
r-cran-rmpi
@@ -2020,7 +1928,6 @@
r-cran-vcd
r-cran-permute
python-statsmodels
- r-cran-spam
r-cran-spatstat
r-cran-deldir
r-cran-fastcluster
@@ -2043,7 +1950,6 @@
Relevance: 10
Packages: list
pegasus-wms
- openstereogram
xoscope
Task: science-typesetting
@@ -2071,7 +1977,6 @@
texlive-math-extra
diploma
lyx
- texmacs
auctex
xfig
transfig
@@ -2131,7 +2036,6 @@
libqglviewer2
python-gnuplot
ovito
- scidavis
veusz
ctioga2
python-seaborn
@@ -2165,7 +2069,6 @@
libvtk-java
vtk-examples
libvtk6-dev
- libvtk6-java
python-vtk6
python-pivy
libgtkdataboxmm-dev
diff -Nru debian-science-1.3/dependency_data/debian-science_1.4.json debian-science-1.4/dependency_data/debian-science_1.4.json
--- debian-science-1.3/dependency_data/debian-science_1.4.json 1970-01-01 01:00:00.000000000 +0100
+++ debian-science-1.4/dependency_data/debian-science_1.4.json 2015-03-29 21:10:20.000000000 +0200
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting", "science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer", "xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit", "amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin", "python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2", "python-nipy", "python-nipype", "python-nitime", "python-dipy", "openwalnut-qt4", "caret", "python-pyepl", "praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron", "itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr", "mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology": {"ignore": [], "suggests": ["paraview", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python-openturns", "python-dap"], "depends": ["cdo", "nco", "dballe", "zygrib", "ncview", "grads", "ferret-vis", "magics++", "freefoam", "visit", "libgrib-api-tools", "ecaccess", "geonetwork", "ncl", "python-netcdf", "python-grib", "python-drslib", "python-cmor", "python-sphere", "cmip5-cmor-tables", "aweather", "libdap-bin", "libdap-doc", "vistrails"], "recommends": [], "avoid": []}, "viewing-dev": {"ignore": [], "suggests": [], "depends": ["pdl", "gnudatalanguage", "python-scientific", "libgrits-dev", "python-matplotlib", "python-scitools", "libgnuplot-iostream-dev", "libqglviewer-dev", "python-gnuplot", "libcoin80-dev", "libsoqt4-dev", "libvtk5-dev", "libvtk5-qt4-dev", "tcl-vtk", "python-vtk", "libvtk-java", "vtk-examples", "libvtk6-dev", "libvtk6-java", "python-vtk6", "python-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-0.9.2-0-dev", "libeinspline-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt4-dev", "python-qwt3d-qt4", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "libplplot-dev", "python-plplot-qt"], "recommends": [], "avoid": []}, "robotics": {"ignore": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime", "libvtk5.4", "octave", "gnuplot", "octovis"], "depends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros", "openrtm", "openhrp", "pcl", "gazebo", "openrave", "octomap-tools", "octovis"], "recommends": [], "avoid": []}, "robotics-dev": {"ignore": [], "suggests": ["visp-images-data"], "depends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat-dev", "libconsole-bridge-dev", "libcomedi-dev", "python-comedilib", "libccd-dev"], "recommends": [], "avoid": []}, "highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []}, "engineering": {"ignore": [], "suggests": ["r-cran-spc", "logcentral", "logcentral-tools", "ann-tools", "salome-kernel"], "depends": ["librecad", "sailcut", "oce-draw", "python-silo", "libsilo-bin", "gerris", "gmsh", "getdp", "netgen", "pythoncad", "z88", "freecad", "feel++-apps", "python-openturns", "code-aster-gui", "code-aster", "metis-edf", "eficas", "code-saturne", "ecs", "hdfview", "sfc", "cba", "python-fiat", "syrthes", "freefoam", "brlcad", "diet-agent", "tetgen", "dime", "avl", "cgns-convert", "pycgns", "varkon", "tochnog", "salome-gui", "salome-jobmanager", "salome-med", "salome-paravis", "salome-smesh", "salome-yacs", "libadios-bin"], "recommends": [], "avoid": []}, "simulations": {"ignore": [], "suggests": [], "depends": ["sumo", "esys-particle", "lammps", "liggghts", "yade", "python-deap", "freefoam", "getdp", "fdmnes", "radiance", "music-bin"], "recommends": [], "avoid": []}, "neuroscience-datasets": {"ignore": [], "suggests": [], "depends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti", "haxby2001-faceobject", "fsl-harvard-oxford-atlases", "fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas", "fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas", "fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas", "mclaren-rhesus-macaque-atlas", "sri24-atlas"], "recommends": [], "avoid": []}, "financial": {"ignore": [], "suggests": [], "depends": ["r-cran-fasianoptions", "r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeseries", "r-cran-fportfolio"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["libmrmpi-dev", "python-mrjob"], "depends": ["pegasus-wms", "openstereogram", "xoscope"], "recommends": [], "avoid": []}, "logic": {"ignore": [], "suggests": [], "depends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona"], "recommends": ["otter"], "avoid": []}, "linguistics": {"ignore": [], "suggests": ["libticcutils2-dev", "frogdata", "libtimbl3-dev", "libtimbl4-dev", "libtimblserver2-dev", "libmbt0-dev", "libucto1-dev", "libfolia-dev", "python-timbl", "wnsqlbuilder", "python-nltk", "python3-nltk"], "depends": ["wordnet", "apertium", "link-grammar", "artha", "sequitur-g2p", "timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl", "frog", "collatinus", "travatar"], "recommends": [], "avoid": []}, "dataacquisition": {"ignore": [], "suggests": ["gnudatalanguage", "comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests", "gpsd", "tango-db", "tango-starter", "tango-accesscontrol", "python-pytango", "python-taurus", "hart"], "depends": ["engauge-digitizer", "qtdmm", "g3data", "ktimetrace", "netcdf-bin", "python-sardana", "jaaa", "ghkl", "narval-utils", "xyscan", "filo", "python-visa", "mx-dataacquisition", "epics", "plot-digitizer", "libfreenect-dev", "opendap"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["r-cran-spc", "science-mathematics", "libtamuanova-dev"], "depends": ["ess", "littler", "r-recommended", "rkward", "r-cran-mapproj", "r-cran-abind", "r-cran-bayesm", "r-cran-boot", "r-cran-cairodevice", "r-cran-car", "r-cran-chron", "r-cran-cluster", "r-cran-coda", "r-cran-codetools", "r-cran-date", "r-cran-dbi", "r-cran-rms", "r-cran-eco", "r-cran-effects", "r-cran-fbasics", "r-cran-fcopulae", "r-cran-fecofin", "r-cran-fextremes", "r-cran-fmultivar", "r-cran-foptions", "r-cran-foreign", "r-cran-fportfolio", "r-cran-timedate", "r-cran-gdata", "r-cran-gmodels", "r-cran-gplots", "r-cran-gregmisc", "r-cran-gtools", "r-cran-hdf5", "r-cran-hmisc", "r-cran-its", "r-cran-kernsmooth", "r-cran-lattice", "r-cran-latticeextra", "r-cran-lhs", "r-cran-lme4", "r-cran-lmtest", "r-cran-mapdata", "r-cran-maps", "r-cran-matchit", "r-cran-matrix", "r-cran-mcmcpack", "r-cran-mgcv", "r-cran-misc3d", "r-cran-mnp", "r-cran-multcomp", "r-cran-mvtnorm", "r-cran-nlme", "r-cran-pscl", "r-cran-psy", "r-cran-qtl", "r-cran-quadprog", "r-cran-rcmdr", "r-cran-relimp", "r-cran-rggobi", "r-cran-rgl", "r-cran-rgtk2", "r-cran-rmpi", "r-cran-rmysql", "r-cran-rodbc", "r-cran-rpart", "r-cran-rpvm", "r-cran-rquantlib", "r-cran-rserve", "r-cran-rsprng", "r-cran-sandwich", 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